KCC003225A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003225A_C01 KCC003225A_c01
aggagttattataatagtcatagAAGAGCTTGCAGCTTTGTTTATACATATCCCACTGAC
CTACGTGTTCTGACTACTTGGAACAGCATCGAAGCTTTTTTTTGCAGAGGCCTCGGTCGG
GCGGCCGCGTCGCCTGTAGGTCAACGACAAAATGTTCTACAGCAAGTCCAGACCACAGCA
TGCGGCCCGCACCAACGTCGCGCAGGCCGCGGCTAATGAAAAGCCAAAGGTGCCAGAGCT
GGAGGAGTTCCTCACGAAGCGCGATTATCTGGGTGCTATCGCACTGCTTTCGTTTAGACG
TCACGCCAACCGGAACGACCTGAAGAACCTCGAATGGCTAGCATACTGCTACTTCCATTA
CGGGGAACACGACAAGGCCCTAGTAATCTACAAGGAGCTGTTGCAGCACGAGGACCCGGA
CCCGATGTTTTTCGTGTACTCGGCAGCATGCCTGTACTATATGGGCATGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003225A_C01 KCC003225A_c01
         (471 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T46452 hypothetical protein DKFZp434I042.1 - human (fragmen...    74  9e-13
ref|NP_705828.1| RIKEN cDNA 9430097H08; hypothetical protein MGC...    73  2e-12
dbj|BAC28974.1| unnamed protein product [Mus musculus]                 73  2e-12
ref|NP_079202.1| hypothetical protein FLJ12571 [Homo sapiens] gi...    72  2e-12
gb|AAH13912.1| FLJ12571 protein [Homo sapiens]                         72  3e-12

>pir||T46452 hypothetical protein DKFZp434I042.1 - human (fragment)
           gi|6807927|emb|CAB70721.1| hypothetical protein [Homo
           sapiens]
          Length = 416

 Score = 73.9 bits (180), Expect = 9e-13
 Identities = 35/107 (32%), Positives = 57/107 (52%)
 Frame = +2

Query: 149 KMFYSKSRPQHAARTNVAQAAANEKPKVPELEEFLTKRDYLGAIALLSFRRHANRNDLKN 328
           KM  S+++P              +  K+P+LEE L+KRD+ GAI LL F+RH    +   
Sbjct: 26  KMMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEFKRHVGEEEEDT 85

Query: 329 LEWLAYCYFHYGEHDKALVIYKELLQHEDPDPMFFVYSAACLYYMGM 469
             W+ YC FH G++ +AL  Y+   + E+ +   +V  A   +++GM
Sbjct: 86  NLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGM 132

>ref|NP_705828.1| RIKEN cDNA 9430097H08; hypothetical protein MGC28016 [Mus musculus]
           gi|21618717|gb|AAH31513.1| RIKEN cDNA 9430097H08 [Mus
           musculus]
          Length = 173

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 33/106 (31%), Positives = 58/106 (54%)
 Frame = +2

Query: 152 MFYSKSRPQHAARTNVAQAAANEKPKVPELEEFLTKRDYLGAIALLSFRRHANRNDLKNL 331
           M  S+++P     +        +  K+P+LE+ L++RD+ GAI LL F+RH    +    
Sbjct: 1   MMLSRAKPAVGGESPHTDKRKKKGRKIPKLEDLLSQRDFTGAITLLEFKRHVGEQEDDTN 60

Query: 332 EWLAYCYFHYGEHDKALVIYKELLQHEDPDPMFFVYSAACLYYMGM 469
            W+ YC FH G++ +AL  Y+   + E+ +P  +V  A   +++GM
Sbjct: 61  LWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGM 106

>dbj|BAC28974.1| unnamed protein product [Mus musculus]
          Length = 554

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 33/106 (31%), Positives = 58/106 (54%)
 Frame = +2

Query: 152 MFYSKSRPQHAARTNVAQAAANEKPKVPELEEFLTKRDYLGAIALLSFRRHANRNDLKNL 331
           M  S+++P     +        +  K+P+LE+ L++RD+ GAI LL F+RH    +    
Sbjct: 1   MMLSRAKPAVGGESPHTDKRKKKGRKIPKLEDLLSQRDFTGAITLLEFKRHVGEQEDDTN 60

Query: 332 EWLAYCYFHYGEHDKALVIYKELLQHEDPDPMFFVYSAACLYYMGM 469
            W+ YC FH G++ +AL  Y+   + E+ +P  +V  A   +++GM
Sbjct: 61  LWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGM 106

>ref|NP_079202.1| hypothetical protein FLJ12571 [Homo sapiens]
           gi|10434137|dbj|BAB14143.1| unnamed protein product
           [Homo sapiens]
          Length = 554

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 34/106 (32%), Positives = 56/106 (52%)
 Frame = +2

Query: 152 MFYSKSRPQHAARTNVAQAAANEKPKVPELEEFLTKRDYLGAIALLSFRRHANRNDLKNL 331
           M  S+++P              +  K+P+LEE L+KRD+ GAI LL F+RH    +    
Sbjct: 1   MMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTN 60

Query: 332 EWLAYCYFHYGEHDKALVIYKELLQHEDPDPMFFVYSAACLYYMGM 469
            W+ YC FH G++ +AL  Y+   + E+ +   +V  A   +++GM
Sbjct: 61  LWIGYCAFHLGDYKRALEEYENATEEENCNSEVWVNLACTYFFLGM 106

>gb|AAH13912.1| FLJ12571 protein [Homo sapiens]
          Length = 271

 Score = 72.0 bits (175), Expect = 3e-12
 Identities = 34/106 (32%), Positives = 56/106 (52%)
 Frame = +2

Query: 152 MFYSKSRPQHAARTNVAQAAANEKPKVPELEEFLTKRDYLGAIALLSFRRHANRNDLKNL 331
           M  S+++P              +  K+P+LEE L+KRD+ GAI LL F+RH    +    
Sbjct: 1   MMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTN 60

Query: 332 EWLAYCYFHYGEHDKALVIYKELLQHEDPDPMFFVYSAACLYYMGM 469
            W+ YC FH G++ +AL  Y+   + E+ +   +V  A   +++GM
Sbjct: 61  LWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGM 106



EST assemble image


clone accession position
1 LCL046f05_r AV628755 1 471
2 MXL091f10_r BP098332 22 380




Chlamydomonas reinhardtii
Kazusa DNA Research Institute