KCC003221A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003221A_C01 KCC003221A_c01
cgacggcgcgcattcggtgaacggcctggcagacggcctggcggGCTCCTTCGACTTACT
GCGTAGCACCTATGGCCCGATGGAGGAGTGACGACTCGCCTCGTGAGCAGGTGCCAATCA
ACTTCGCGGCAGTGGGCCATGCGCCCGTGCACCCCACGCACGAACCGCGTGTGGAGGTGT
GCCCACCTCCGCAAGTGCCTGTGCGGCTGGACAGACACCTAACATGCAGTGCTGACACTG
GCACCCTCTACACCAAATTGGCGAGCAGGCTGTGGAGCCGACGGCTACGGAGCGTGGCGC
CACCGACCATGGCCTAGCTGACGTGGACGGCGGCAGCGACGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003221A_C01 KCC003221A_c01
         (343 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAA17842.1| doublesex                                               35  0.36
ref|NP_731197.1| doublesex CG11094-PA [Drosophila melanogaster] ...    35  0.36
gb|AAH44494.1| Similar to kraken-like [Danio rerio]                    33  1.0
ref|NP_631558.1| putative secreted hydrolase [Streptomyces coeli...    33  1.4
emb|CAB95220.1| hypothetical protein P1295.12 [Leishmania major]       32  1.8

>gb|AAA17842.1| doublesex
          Length = 151

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 21/71 (29%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
 Frame = +3

Query: 135 GHAPVHPTHEPRVEVCPPPQVPVRLDRHLTCSADTGTLYTKLASRLWSRR--LRSVAPPT 308
           G    H TH P  ++CPP   P+ L R  +  +    ++ +  SR  S    + S A PT
Sbjct: 37  GRYGAHFTHLPLTQICPPTPEPLALSRSPSSPSGPSAVHNQKPSRPGSSNGTVHSAASPT 96

Query: 309 MA*LTWTAAAT 341
           M     T ++T
Sbjct: 97  MVTTMATTSST 107

>ref|NP_731197.1| doublesex CG11094-PA [Drosophila melanogaster]
           gi|118943|sp|P23023|DSX_DROME Doublesex protein
           gi|103238|pir||B32372 male-specific doublesex protein -
           fruit fly (Drosophila melanogaster)
           gi|7298965|gb|AAF54169.1| CG11094-PA [Drosophila
           melanogaster]
          Length = 549

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 21/71 (29%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
 Frame = +3

Query: 135 GHAPVHPTHEPRVEVCPPPQVPVRLDRHLTCSADTGTLYTKLASRLWSRR--LRSVAPPT 308
           G    H TH P  ++CPP   P+ L R  +  +    ++ +  SR  S    + S A PT
Sbjct: 435 GRYGAHFTHLPLTQICPPTPEPLALSRSPSSPSGPSAVHNQKPSRPGSSNGTVHSAASPT 494

Query: 309 MA*LTWTAAAT 341
           M     T ++T
Sbjct: 495 MVTTMATTSST 505

>gb|AAH44494.1| Similar to kraken-like [Danio rerio]
          Length = 321

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 21/52 (40%), Positives = 24/52 (45%), Gaps = 4/52 (7%)
 Frame = +1

Query: 166 RVWRCAHLRKCLC--GWTDT*HAVLTLAPSTPN-WR-AGCGADGYGAWRHRP 309
           +VW  +H R  LC  GW D      TL P  PN WR       G+G   HRP
Sbjct: 30  QVWGPSHGRPVLCLHGWADNSGTFNTLVPLLPNDWRFVAIDFPGHGLSSHRP 81

>ref|NP_631558.1| putative secreted hydrolase [Streptomyces coelicolor A3(2)]
           gi|14495023|emb|CAC42140.1| putative secreted hydrolase
           [Streptomyces coelicolor A3(2)]
          Length = 295

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
 Frame = +2

Query: 134 GPCARAPHARTACGGVP-----TSASAC------AAGQTPNMQC*HWHPLHQIGEQAVEP 280
           G  ARAPHAR A  G P     T+  +C      AAG  P ++    H        AV  
Sbjct: 178 GVRARAPHARVAALGYPWITPATADPSCFLKLPLAAGDVPYLRAIQAHL-----NDAVRR 232

Query: 281 TATERGATDHGLADVDGGSDA 343
            A E GAT    + V  G DA
Sbjct: 233 AAEETGATYVDFSGVSDGHDA 253

>emb|CAB95220.1| hypothetical protein P1295.12 [Leishmania major]
          Length = 1086

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 HARTACGGVPTSASACAAGQTPNMQC*HWHPLH 253
           HA T C GV   A++ AA  +P+ +  H  PLH
Sbjct: 568 HAGTPCAGVQQGAASTAAAASPSSKAGHLSPLH 600



EST assemble image


clone accession position
1 LCL044d04_r AV628601 1 309
2 MXL033h06_r BP094987 45 343




Chlamydomonas reinhardtii
Kazusa DNA Research Institute