KCC003215A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003215A_C01 KCC003215A_c01
ctcaacccgtgacctcaaccgcatactttgcatacataacagctaagcagttactgacga
gcaaactcggcgtccagcttGGTATCCTCAATACCGCTCGCTTTTCCGCCCAACCTGCAC
TCCTGGGAAGTAATAAGCTCTCATGCGTAGATCCCAACAGTCTCTCCGCTTACTGGCGGG
CCTAGCGAGCTACGTGCGCACGGGTCAGCGGGCAGCCCAGACGCTGACTGCGCTTGCGTT
GAGCGAGCGGCAGCTTTCGTCGCAGACAGCCTCGACGTCTGGACATGGCTACTCCTCTGG
CTGGCCATTTGCTGCCCTCCCGCTGCTGGCTGTGGCCGCCGCGGGCACGACGCTTGCGGA
TGCGAAAGACAGCCCTGACCAGGAGGGCTTCCACCTGCTGCCGCTTGCTTCGCGCCAGCG
CATCTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGTCTTCGA
GTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGGACGTCGACTTGTTGCG
TGCCATCGTGCCAACCTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003215A_C01 KCC003215A_c01
         (558 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE02932.1| OSJNBa0014K14.4 [Oryza sativa (japonica cultivar...    54  2e-06
ref|NP_194934.1| calcium-binding EF-hand family protein [Arabido...    52  4e-06
ref|XP_319867.1| ENSANGP00000005253 [Anopheles gambiae] gi|21302...    42  0.004
gb|AAP06316.1| similar to GenBank Accession Number AE003616 calc...    42  0.007
ref|NP_659071.1| calcium binding atopy-related autoantigen 1 [Mu...    38  0.11

>emb|CAE02932.1| OSJNBa0014K14.4 [Oryza sativa (japonica cultivar-group)]
          Length = 472

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 32/88 (36%), Positives = 52/88 (58%), Gaps = 2/88 (2%)
 Frame = +2

Query: 296 SGWPFAALPLLAVAA-AGTTLADAKDSPDQEGFHLLPLASRQRIFFKYEKRIRDMSTLDK 472
           SG   A  P + ++  +G+    A +   ++   LL  + R+R+FF YEKRIR +S  +K
Sbjct: 68  SGEAVADAPAVQISVGSGSGAVGAVEERGRKRRFLLGDSFRRRVFFNYEKRIRLLSPPEK 127

Query: 473 VFEYFSS-QEKDKHKFLADVDLLRAIVP 553
           +FEYF+S +  +   F+   DL+RA+VP
Sbjct: 128 IFEYFASVRNPEGEVFMLPADLMRAVVP 155

>ref|NP_194934.1| calcium-binding EF-hand family protein [Arabidopsis thaliana]
           gi|7485364|pir||T04640 hypothetical protein F10N7.140 -
           Arabidopsis thaliana gi|2827631|emb|CAA16584.1| putative
           protein [Arabidopsis thaliana]
           gi|7270110|emb|CAB79924.1| putative protein [Arabidopsis
           thaliana] gi|18176110|gb|AAL59985.1| unknown protein
           [Arabidopsis thaliana] gi|21689743|gb|AAM67515.1|
           unknown protein [Arabidopsis thaliana]
          Length = 498

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
 Frame = +2

Query: 407 ASRQRIFFKYEKRIRDMSTLDKVFEYFSSQEKDKHKFL-ADVDLLRAIVP 553
           A R++IFF YEKR+R  S  +KVFEYF+S   DK + L    DL+RAIVP
Sbjct: 137 AYRRKIFFNYEKRLRLQSPPEKVFEYFASVRTDKGEILMKPADLMRAIVP 186

>ref|XP_319867.1| ENSANGP00000005253 [Anopheles gambiae] gi|21302561|gb|EAA14706.1|
           ENSANGP00000005253 [Anopheles gambiae str. PEST]
          Length = 454

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
 Frame = +2

Query: 356 ADAKDSPDQEG---FHLLPLASRQRIFFKYEKRIRDMSTLDKVFEYFSSQEKDKHKFLAD 526
           ADA+   D +G        +  R R   +YE RIR  ST DKVF YF++       F+  
Sbjct: 71  ADAESDVDAQGRKKSRKEKIGFRDRKIIEYENRIRQYSTPDKVFRYFATIHDGVEVFMTP 130

Query: 527 VDLLRAIVP 553
           +D L ++ P
Sbjct: 131 IDFLTSMTP 139

>gb|AAP06316.1| similar to GenBank Accession Number AE003616 calcium binding
           atopy-related autoantigen 1;atopy related autoantigen in
           Mus musculus [Schistosoma japonicum]
          Length = 409

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 27/73 (36%), Positives = 37/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 347 TTLADAKDSPDQEGFHLLPLASRQRIFFKYEKRIRDMSTLDKVFEYF----SSQEKDKHK 514
           T+L D ++S   E      +  R R F  YE RIR  ST DK+F YF    S +E  +  
Sbjct: 42  TSLKD-EESHQNESVKKKHVGFRDRKFIAYENRIRAYSTPDKIFRYFATLKSVEEDSETI 100

Query: 515 FLADVDLLRAIVP 553
           ++   D LR+I P
Sbjct: 101 YMTPEDFLRSITP 113

>ref|NP_659071.1| calcium binding atopy-related autoantigen 1 [Mus musculus]
           gi|17390748|gb|AAH18320.1| Calcium binding atopy-related
           autoantigen 1 [Mus musculus] gi|18605858|gb|AAH23042.1|
           Calcium binding atopy-related autoantigen 1 [Mus
           musculus] gi|20072348|gb|AAH26566.1| Calcium binding
           atopy-related autoantigen 1 [Mus musculus]
           gi|26340258|dbj|BAC33792.1| unnamed protein product [Mus
           musculus] gi|26340822|dbj|BAC34073.1| unnamed protein
           product [Mus musculus] gi|26342713|dbj|BAC35013.1|
           unnamed protein product [Mus musculus]
          Length = 477

 Score = 37.7 bits (86), Expect = 0.11
 Identities = 24/71 (33%), Positives = 33/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 356 ADAKDSPDQEGFHLLPLASRQRIFFKYEKRIRDMSTLDKVFEYFS-----SQEKDKHKFL 520
           ADA   P  E         R R   +YE RIR  ST DK+F YF+     ++  +   F+
Sbjct: 90  ADAAAEPYPEDKKKKRSGFRDRKVMEYENRIRAYSTPDKIFRYFATLKVINEPGETEVFM 149

Query: 521 ADVDLLRAIVP 553
              D +R+I P
Sbjct: 150 TPQDFVRSITP 160



EST assemble image


clone accession position
1 LCL043f07_r AV628552 1 520
2 MX034d01_r BP087430 177 558




Chlamydomonas reinhardtii
Kazusa DNA Research Institute