KCC003212A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003212A_C01 KCC003212A_c01
gctcgtcttcttcacataacagtgtgTATTCTATTGACTTGATACGCTTCTGACCCTGCC
ACTCGTGTTCGAGCGACTTGCTGAACTTGAAAACAGACCGAAGCGCGCGAAAGTCGACCG
ACAGCAGCCATGGACGGCGAGACGAACCCGCTGGACCAGTATGAGCCCGTCGAGGATGAG
GTCCTCGAGGAGGAGGAGGAGGGCGAGGACCTTATGGAGAACATGGAGCGGGACTACCAG
CCACAGCCGCACCTGGACAACTACGACGCGGAGGGCATCGACGACGATGCTGAGGAGGAG
GGCGATGTGGACGCGCACGCTGCGCGCATGGCTGCCGAGGAGGAGCTGAACCGCCGCGAT
GCTAAAAAGCTGCGGCCACGCCGCGGTGCTGTCCCGGATTTCATGATGGAGGACGACGAC
CAACCACGGCGTGACGAGTTCAACCGCCGCCGCAAGCGGCGCTCGGACGCGGGGATGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003212A_C01 KCC003212A_c01
         (479 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_313198.1| ENSANGP00000013357 [Anopheles gambiae] gi|21296...    70  1e-11
ref|XP_307583.1| ENSANGP00000015464 [Anopheles gambiae] gi|30179...    70  1e-11
dbj|BAC97849.1| mKIAA0030 protein [Mus musculus]                       68  6e-11
ref|NP_032590.1| minichromosome maintenance deficient 2 mitotin;...    68  6e-11
dbj|BAC40178.1| unnamed protein product [Mus musculus] gi|332439...    68  6e-11

>ref|XP_313198.1| ENSANGP00000013357 [Anopheles gambiae] gi|21296525|gb|EAA08670.1|
           ENSANGP00000013357 [Anopheles gambiae str. PEST]
          Length = 910

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 48/114 (42%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
 Frame = +1

Query: 136 GETNPLDQYEPVEDEVL-------------EEEEEGEDLM-ENMERDYQPQPHLDNYDAE 273
           G T+P+  +EP EDE               EEE +GE+L  +NME DY+P PHLD YD +
Sbjct: 34  GATSPVGDFEPFEDEAEILGDTTVRDEIYDEEEADGEELFGDNMEADYRPAPHLDRYDMD 93

Query: 274 GIDDDAEEEGDVDAHAARMAAEEELNR--RDAKKLRPRRGAVPDFMMEDDDQPR 429
             D D EE  D+ + A R AAE E+ R  RDA   R  R    D   ++DD PR
Sbjct: 94  --DLDTEEYSDI-SQADRAAAEAEMRRRDRDAGVHRDHRDLFYDKSDDEDDIPR 144

>ref|XP_307583.1| ENSANGP00000015464 [Anopheles gambiae] gi|30179139|gb|EAA03379.2|
           ENSANGP00000015464 [Anopheles gambiae str. PEST]
          Length = 381

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 48/114 (42%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
 Frame = +1

Query: 136 GETNPLDQYEPVEDEVL-------------EEEEEGEDLM-ENMERDYQPQPHLDNYDAE 273
           G T+P+  +EP EDE               EEE +GE+L  +NME DY+P PHLD YD +
Sbjct: 22  GATSPVGDFEPFEDEAEILGDTTVRDEIYDEEEADGEELFGDNMEADYRPAPHLDRYDMD 81

Query: 274 GIDDDAEEEGDVDAHAARMAAEEELNR--RDAKKLRPRRGAVPDFMMEDDDQPR 429
             D D EE  D+ + A R AAE E+ R  RDA   R  R    D   ++DD PR
Sbjct: 82  --DLDTEEYSDI-SQADRAAAEAEMRRRDRDAGVHRDHRDLFYDKSDDEDDIPR 132

>dbj|BAC97849.1| mKIAA0030 protein [Mus musculus]
          Length = 907

 Score = 67.8 bits (164), Expect = 6e-11
 Identities = 52/143 (36%), Positives = 76/143 (52%), Gaps = 14/143 (9%)
 Frame = +1

Query: 46  ASDPATRVRATC*T*KQTEARESRPTAAMDGETNPLDQYEPVEDEV---------LEEEE 198
           AS PA + R        +  R SR   A+   ++P     P EDE          +EEEE
Sbjct: 13  ASSPARQRRRISDPLTSSPGRSSRRADALT--SSPGRDLPPFEDESEGLLGTEGPMEEEE 70

Query: 199 EGEDLM-ENMERDYQPQPHLDNYDAEGIDDDAEEEGDVDAHAARMAAEEELNRRDAKK-- 369
           +GE+L+ + MERDY+P P LD Y+AEG+  D E+  ++ A + R AAE  + +RD +   
Sbjct: 71  DGEELIGDGMERDYRPIPELDVYEAEGLALDDEDVEELTA-SQREAAERTMRQRDREAGR 129

Query: 370 --LRPRRGAVPDFMMEDDDQPRR 432
              R RRG + D   ED+++P R
Sbjct: 130 GLGRMRRGLLYDSSEEDEERPAR 152

>ref|NP_032590.1| minichromosome maintenance deficient 2 mitotin; mini chromosome
           maintenance deficient 2 (S. cerevisiae) [Mus musculus]
           gi|2851575|sp|P97310|MCM2_MOUSE DNA replication
           licensing factor MCM2 gi|7428556|pir||T10067 replication
           licensing factor MCM2 - mouse gi|2381485|dbj|BAA22148.1|
           mMCM2 [Mus musculus]
          Length = 904

 Score = 67.8 bits (164), Expect = 6e-11
 Identities = 52/143 (36%), Positives = 76/143 (52%), Gaps = 14/143 (9%)
 Frame = +1

Query: 46  ASDPATRVRATC*T*KQTEARESRPTAAMDGETNPLDQYEPVEDEV---------LEEEE 198
           AS PA + R        +  R SR   A+   ++P     P EDE          +EEEE
Sbjct: 10  ASSPARQRRRISDPLTSSPGRSSRRADALT--SSPGRDLPPFEDESEGLLGTEGPMEEEE 67

Query: 199 EGEDLM-ENMERDYQPQPHLDNYDAEGIDDDAEEEGDVDAHAARMAAEEELNRRDAKK-- 369
           +GE+L+ + MERDY+P P LD Y+AEG+  D E+  ++ A + R AAE  + +RD +   
Sbjct: 68  DGEELIGDGMERDYRPIPELDVYEAEGLALDDEDVEELTA-SQREAAERTMRQRDREAGR 126

Query: 370 --LRPRRGAVPDFMMEDDDQPRR 432
              R RRG + D   ED+++P R
Sbjct: 127 GLGRMRRGLLYDSSEEDEERPAR 149

>dbj|BAC40178.1| unnamed protein product [Mus musculus] gi|33243985|gb|AAH55318.1|
           Minichromosome maintenance deficient 2 mitotin [Mus
           musculus]
          Length = 904

 Score = 67.8 bits (164), Expect = 6e-11
 Identities = 52/143 (36%), Positives = 76/143 (52%), Gaps = 14/143 (9%)
 Frame = +1

Query: 46  ASDPATRVRATC*T*KQTEARESRPTAAMDGETNPLDQYEPVEDEV---------LEEEE 198
           AS PA + R        +  R SR   A+   ++P     P EDE          +EEEE
Sbjct: 10  ASSPARQRRRISDPLTSSPGRSSRRADALT--SSPGRDLPPFEDESEGLLGTEGPMEEEE 67

Query: 199 EGEDLM-ENMERDYQPQPHLDNYDAEGIDDDAEEEGDVDAHAARMAAEEELNRRDAKK-- 369
           +GE+L+ + MERDY+P P LD Y+AEG+  D E+  ++ A + R AAE  + +RD +   
Sbjct: 68  DGEELIGDGMERDYRPIPELDVYEAEGLALDDEDVEELTA-SQREAAERTMRQRDREAGR 126

Query: 370 --LRPRRGAVPDFMMEDDDQPRR 432
              R RRG + D   ED+++P R
Sbjct: 127 GLGRMRRGLLYDSSEEDEERPAR 149



EST assemble image


clone accession position
1 LCL042b01_r AV628450 1 458
2 LCL086g11_r AV630954 27 479
3 LCL041g12_r AV628435 27 405
4 LCL042g03_r AV628493 27 348




Chlamydomonas reinhardtii
Kazusa DNA Research Institute