KCC003211A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003211A_C01 KCC003211A_c01
gagagagaaggacaagggcggcggcaagggcgtgcgctacagccccctgggagcgcccac
ggaggtggcactgctgacggCGGCTGAGAAGGCCGGCCTGCCGCCCGCGGCGGAGCTGAA
GGCGGCCGTGCCGCGTGTGGGCACCGTGCCGTTTGAGAGTGAGCACAAGTTCATGGCGAC
GGTGCACCGGGAGCAGGCGGAGGGCGGCGGCAGCGAACTGATCATGTATGTCAAGGGCGC
ACCGGACCGACTGCTGCCGCTGTGCAACAGCCAGGTTGTTGACAACGACCTGAGCCGCAC
CGCCGATCTGGACCCGGGCTTTTGGAAGGCGCAGCAGGCGGCGCTCAGCAGCAGGGGACT
GCGAGTGCTGGCGCTGTGCAGGACCGTGCTCCCGGAAGACACCGACCTCTCCGTCCTTTC
GCCTGCCTGGCTGCTGTCTGGTGGCGTGAATCCGGAGGCCGCGGCGGCAGCTGCGGCTGA
GGGCAAGCGGCCGCCGGCACCTGCCGCGAAGCTGCAGCTGTCAATGGTGCTGCTGGTGGC
TATCCTGGACCCGCCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003211A_C01 KCC003211A_c01
         (558 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00139043.1| COG0474: Cation transport ATPase [Pseudomonas...    94  2e-18
ref|NP_250120.1| probable cation-transporting P-type ATPase [Pse...    93  2e-18
ref|NP_738280.1| putative cation-transporting P-type ATPase [Cor...    81  1e-14
ref|NP_216513.1| ctpF [Mycobacterium tuberculosis H37Rv] gi|3179...    80  1e-14
ref|NP_336516.1| cation-transporting ATPase, E1-E2 family [Mycob...    80  1e-14

>ref|ZP_00139043.1| COG0474: Cation transport ATPase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 902

 Score = 93.6 bits (231), Expect = 2e-18
 Identities = 59/152 (38%), Positives = 86/152 (55%), Gaps = 8/152 (5%)
 Frame = +2

Query: 50  GAPTEVALLTAAEKAGLPPAAELKAAVPRVGTVPFESEHKFMATVHREQAEGGGSELIMY 229
           G PTE ALL+   K GL P A L A  PR   +PFESEH+FMAT+H + A     + ++Y
Sbjct: 410 GDPTEGALLSLGLKLGLDPQA-LAAERPRSDAIPFESEHRFMATLHHDHA----GQAMVY 464

Query: 230 VKGAPDRLLPLCNSQVVDNDLSRTADLDPGFWKAQQAALSSRGLRVLALCRTVLPED--- 400
           +KGAP+R+L +C ++ V + +     LDP +W+      ++RGLR+LA+ R  +P +   
Sbjct: 465 LKGAPERILDMCEAERVGDSV---RSLDPDYWRRLATDTAARGLRLLAIARRAMPAEQRT 521

Query: 401 ---TDLSVLSPAWLLSGGVNP--EAAAAAAAE 481
               D+        L G ++P  E A AA AE
Sbjct: 522 LDFADVEHGFTLLALVGIIDPPREEAVAAVAE 553

>ref|NP_250120.1| probable cation-transporting P-type ATPase [Pseudomonas aeruginosa
           PA01] gi|11351145|pir||D83467 probable
           cation-transporting P-type ATPase PA1429 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           gi|9947378|gb|AAG04818.1|AE004572_6 probable
           cation-transporting P-type ATPase [Pseudomonas
           aeruginosa PAO1]
          Length = 902

 Score = 93.2 bits (230), Expect = 2e-18
 Identities = 59/152 (38%), Positives = 86/152 (55%), Gaps = 8/152 (5%)
 Frame = +2

Query: 50  GAPTEVALLTAAEKAGLPPAAELKAAVPRVGTVPFESEHKFMATVHREQAEGGGSELIMY 229
           G PTE ALL+   K GL P A L A  PR   +PFESEH+FMAT+H + A     + ++Y
Sbjct: 410 GDPTEGALLSLGLKLGLDPQA-LAAERPRSDAIPFESEHRFMATLHHDHA----GQAMVY 464

Query: 230 VKGAPDRLLPLCNSQVVDNDLSRTADLDPGFWKAQQAALSSRGLRVLALCRTVLPED--- 400
           +KGAP+R+L +C ++ V + +     LDP +W+      ++RGLR+LA+ R  +P +   
Sbjct: 465 LKGAPERILDMCEAERVGDSV---RPLDPDYWRRLATDTAARGLRLLAIARRAMPAEQRT 521

Query: 401 ---TDLSVLSPAWLLSGGVNP--EAAAAAAAE 481
               D+        L G ++P  E A AA AE
Sbjct: 522 LDFADVEHGFTLLALVGIIDPPREEAVAAVAE 553

>ref|NP_738280.1| putative cation-transporting P-type ATPase [Corynebacterium
           efficiens YS-314] gi|23493510|dbj|BAC18480.1| putative
           cation-transporting P-type ATPase [Corynebacterium
           efficiens YS-314]
          Length = 976

 Score = 80.9 bits (198), Expect = 1e-14
 Identities = 51/116 (43%), Positives = 62/116 (52%)
 Frame = +2

Query: 47  LGAPTEVALLTAAEKAGLPPAAELKAAVPRVGTVPFESEHKFMATVHREQAEGGGSELIM 226
           +G PT+  +   A K G+ PA       PR+  VPF+S +K+MAT+H      G  E IM
Sbjct: 497 VGEPTDGGIRAFAMKTGVEPA-------PRLAEVPFDSSYKYMATLHE-----GDGEQIM 544

Query: 227 YVKGAPDRLLPLCNSQVVDNDLSRTADLDPGFWKAQQAALSSRGLRVLALCRTVLP 394
            VKGAPDRLL     Q         A LD  FW+A+   L SRGLRVLA  R  LP
Sbjct: 545 LVKGAPDRLLDRSTRQ------GEGAPLDRAFWEARIEELGSRGLRVLAAARRALP 594

>ref|NP_216513.1| ctpF [Mycobacterium tuberculosis H37Rv]
           gi|31793177|ref|NP_855670.1| PROBABLE METAL CATION
           TRANSPORTER P-TYPE ATPASE A CTPF [Mycobacterium bovis
           subsp. bovis AF2122/97] gi|6014746|sp|Q10860|CTPF_MYCTU
           Probable cation-transporting ATPase F
           gi|7436379|pir||C70758 probable cation transport ATPase
           - Mycobacterium tuberculosis (strain H37RV)
           gi|3261590|emb|CAA98413.1| ctpF [Mycobacterium
           tuberculosis H37Rv] gi|31618769|emb|CAD96873.1| PROBABLE
           METAL CATION TRANSPORTER P-TYPE ATPASE A CTPF
           [Mycobacterium bovis subsp. bovis AF2122/97]
          Length = 905

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 59/169 (34%), Positives = 87/169 (50%), Gaps = 7/169 (4%)
 Frame = +2

Query: 29  GVRYSPLGAPTEVALLTAAEKAGLPPAAELKAAVPRVGTVPFESEHKFMATVHREQAEGG 208
           G R+  +G PTE A+L  A KAG  P   L   +P+V  +PF SE ++MAT+HR+     
Sbjct: 403 GTRWQIVGDPTEGAMLVVAAKAGFNPE-RLATTLPQVAAIPFSSERQYMATLHRD----- 456

Query: 209 GSELIMYVKGAPDRLLPLCNSQVVDNDLSRTADLDPGFWKAQQAALSSRGLRVLAL---C 379
           G++ ++  KGA +R+L LC +++  +   R   LD          L+SRGLRVLA     
Sbjct: 457 GTDHVVLAKGAVERMLDLCGTEMGADGALR--PLDRATVLRATEMLTSRGLRVLATGMGA 514

Query: 380 RTVLPEDTDLSVLSPAWLLSG----GVNPEAAAAAAAEGKRPPAPAAKL 514
               P+D D +V+  +  L+G       P AAAA+A         A K+
Sbjct: 515 GAGTPDDFDENVIPGSLALTGLQAMSDPPRAAAASAVAACHSAGIAVKM 563

>ref|NP_336516.1| cation-transporting ATPase, E1-E2 family [Mycobacterium
           tuberculosis CDC1551] gi|13881720|gb|AAK46330.1|
           cation-transporting ATPase, E1-E2 family [Mycobacterium
           tuberculosis CDC1551]
          Length = 901

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 59/169 (34%), Positives = 87/169 (50%), Gaps = 7/169 (4%)
 Frame = +2

Query: 29  GVRYSPLGAPTEVALLTAAEKAGLPPAAELKAAVPRVGTVPFESEHKFMATVHREQAEGG 208
           G R+  +G PTE A+L  A KAG  P   L   +P+V  +PF SE ++MAT+HR+     
Sbjct: 399 GTRWQIVGDPTEGAMLVVAAKAGFNPE-RLATTLPQVAAIPFSSERQYMATLHRD----- 452

Query: 209 GSELIMYVKGAPDRLLPLCNSQVVDNDLSRTADLDPGFWKAQQAALSSRGLRVLAL---C 379
           G++ ++  KGA +R+L LC +++  +   R   LD          L+SRGLRVLA     
Sbjct: 453 GTDHVVLAKGAVERMLDLCGTEMGADGALR--PLDRATVLRATEMLTSRGLRVLATGMGA 510

Query: 380 RTVLPEDTDLSVLSPAWLLSG----GVNPEAAAAAAAEGKRPPAPAAKL 514
               P+D D +V+  +  L+G       P AAAA+A         A K+
Sbjct: 511 GAGTPDDFDENVIPGSLALTGLQAMSDPPRAAAASAVAACHSAGIAVKM 559



EST assemble image


clone accession position
1 LCL041e08_r AV628423 1 407
2 MXL076e02_r BP097484 128 558




Chlamydomonas reinhardtii
Kazusa DNA Research Institute