KCC003203A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003203A_C01 KCC003203A_c01
ggaACACAGACACGTTACACTCATTGGCTCGCCCTTTCAACTTCCATCCTTGGGTAAAAA
AACTTCGACCGATAAGCCCAGGCCCCCGACATCAAAACTGTGACATGTCTTCCGGTGTGC
AGCCACTGGGCGCCACCCTGTGACAAGCGTACTATAAAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003203A_C01 KCC003203A_c01
         (160 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

 ***** No hits found ******

  Database: nr
    Posted date:  Oct 14, 2003 12:26 AM
  Number of letters in database: 498,525,298
  Number of sequences in database:  1,537,769
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,762,392
Number of Sequences: 1537769
Number of extensions: 3013772
Number of successful extensions: 9637
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 9495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9635
length of database: 498,525,298
effective HSP length: 28
effective length of database: 455,467,766
effective search space used: 10931226384
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 LCL082g11_r AV630695 1 160
2 LCL040c11_r AV628340 4 149




Chlamydomonas reinhardtii
Kazusa DNA Research Institute