KCC003189A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003189A_C01 KCC003189A_c01
ctggagtttaggtgcgtgccggcacaagccggttggttcCAAGGAGTTGCATGTCCAGAG
AGCTACGATGGAAGGCTGTGACTAACCTGGGCGCTGGGAGCCACGCCCATCGGATAGCGT
TGGTGTTGTGGTTGTCAGTTAGGATTAAGTGCAGATACGAAATGCGTATCTTACTGTCAC
TTCACGATGCGCGTTGGCGTTTCCGGGCACGGCTGCACGGGTGGGTCGTCGGCCAGGCTG
GTGGCCGGCGGAACGGGGTTGCAAGCAGGGGGTTAGCGGCAGGGTTGACACGCGGTGTAC
CGGTGTACATGCAAGCGTGGCGAAAACTCGAAAAGAAGTTTAAGTTAGCGTTGAGGTGCG
TGCCGGCAAGCCGGTTGGTTTTAAGAGAGCTCATTGGAAGGCTTTGCTGACAGGGAGCCC
CATTGGAAAGCGTTGGTGTTGTGGATGTGTGTGCTGTCAGTGCTGCCCGGCACAGCTGCC
GCTAAAATGACGTGTTTAATTGGACATGGCTTAGGTGCATGATGCAAGGATTCACATGAT
GAGGTTGACACCTGCAAAACACGAGGTGTGCTTCGTCAGGGTTGCATGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003189A_C01 KCC003189A_c01
         (590 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO52542.1| similar to PH (pleckstrin homology) domain [Caeno...    33  3.0
ref|XP_318004.1| ENSANGP00000003373 [Anopheles gambiae] gi|21301...    33  3.0
emb|CAD40600.1| OSJNBb0066J23.4 [Oryza sativa (japonica cultivar...    33  3.0
gb|AAD41594.1|AF071081_1 proline-rich mucin homolog [Mycobacteri...    33  3.0
ref|NP_189775.1| plant transposase (Ptta/En/Spm) family [Arabido...    33  3.0

>gb|AAO52542.1| similar to PH (pleckstrin homology) domain [Caenorhabditis elegans]
            [Dictyostelium discoideum]
          Length = 1165

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 8/158 (5%)
 Frame = -1

Query: 491  VILAAAVPGSTDSTHIHNTNAFQWGSLSAKPSNELS*NQPACRHAPQR*LKLLFEFSPRL 312
            +++   +P  T  +H +        S+  KPSN  + N      +P+     L + SP+ 
Sbjct: 729  LVVRGGIPLPTTQSHGNLRPMLPINSVILKPSNNNNNNDQPKFQSPEFPQSKLSKTSPQS 788

Query: 311  HVHRYTACQPCR*PPACNPVPPATSLADDPPVQPCPETPTRIVK*Q*DTHFVSALNPN*Q 132
              +          PP   P PP  +        P P+TP          H    L P   
Sbjct: 789  SSNNLNLITKSNKPPLSPPTPPHHN-------HPLPQTP---------PHHNHPLPPT-P 831

Query: 131  PQH------QRYPMGVAPSAQV--SHSLPS*LSGHATP 42
            PQH       ++P+   P +     HSLPS    H  P
Sbjct: 832  PQHPLPPPPPQHPLPPIPQSHTPPQHSLPSVPQSHTPP 869

>ref|XP_318004.1| ENSANGP00000003373 [Anopheles gambiae] gi|21301070|gb|EAA13215.1|
           ENSANGP00000003373 [Anopheles gambiae str. PEST]
          Length = 1043

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 272 PPACNPVPPATSLADDPPVQPCPETP 195
           PP   P+PP+ + A  PP  PCP  P
Sbjct: 493 PPPAPPIPPSAANAPMPPPPPCPPAP 518

>emb|CAD40600.1| OSJNBb0066J23.4 [Oryza sativa (japonica cultivar-group)]
          Length = 1348

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 284  PCR*PPACNPVPPATSLADDPPVQPCPETPTRI 186
            P   PP   P PPA S    PP  PCP TP +I
Sbjct: 927  PAPPPPPAAPSPPAPS---PPPPPPCPSTPPKI 956

>gb|AAD41594.1|AF071081_1 proline-rich mucin homolog [Mycobacterium tuberculosis]
          Length = 763

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 272 PPACNP-VPPATSLADDPPVQPCPETP 195
           P A NP  PPA  LA+ PP+ P P TP
Sbjct: 154 PAALNPPAPPAPPLANSPPLPPAPPTP 180

 Score = 32.7 bits (73), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 272 PPA---CNPVPPATSLADDPPVQPCPETPTRIV 183
           PPA   C P+PP+    + PP  P P TP +++
Sbjct: 529 PPATRLCPPLPPSPPAPNSPPAPPAPPTPPKLL 561

>ref|NP_189775.1| plant transposase (Ptta/En/Spm) family [Arabidopsis thaliana]
           gi|8777579|dbj|BAA97097.1| En/Spm transposon
           protein-like [Arabidopsis thaliana]
          Length = 504

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 272 PPACNPVPPATSLADDPPVQPCPETPT 192
           P   +P+PP  +   DPP+ P PETP+
Sbjct: 86  PQRVDPLPPQETAQQDPPLSPDPETPS 112



EST assemble image


clone accession position
1 LCL085d01_r AV630861 1 230
2 LCL036f04_r AV628095 40 590




Chlamydomonas reinhardtii
Kazusa DNA Research Institute