KCC003188A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003188A_C01 KCC003188A_c01
cctaaacattggtcacattgtgactgggcgactctgcagacttggcctggccagggggtg
tccctgggcgtccctgggccGGCTCAGGCCCCCGATCGCCCACGGTTCGTGCTGCGTCAT
ACTTGCTCCCCTTGCTGTCATAAACGCTGCCAACTGTATTGACCTAGCACACTGTGTGAC
ATTTGAAGTGTTCTTGCTCCAAACGCTCCATTTTATACTCAAGAACTCGATCCATTGTTG
CACACACTCCCAGCGGTGGCGCCACGGATTGCCACCATGGCTGAATCGGCTCAAGACGTG
CGGCGGATAGCGCTAGGCATTCTGCAGGCGCGTCTGATGGATGCGAGACAGATTCAAGAC
GAGTACCGATCTGTGCTGGGGCGCGACCACAACATTCGGGCGTCATGCCACATCGCGCAG
GCGCCCGGCAACGCGCCCAAGAACCGGTACGTGAACGTCCTACCATACGATCACAACCGC
GTCTTGCTGCGCACGGGCCGTAGCGGCCTGCCTTCTGCCTCCCGCGCCTCCAACGGGTGT
AGCAGCAGCGGCAGCAGCAGCGGCGGCAACAGCGGACACATAAACTACGCGGCGTTCGGC
ATGGGATCCAGCACGGCTGCAGCGGCCCCCACACCCGACTACATTAATGCCAGTCACGTG
GTCCACGATGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003188A_C01 KCC003188A_c01
         (671 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ72837.1| CD45 [Ictalurus punctatus]                              49  7e-05
emb|CAA06975.1| tyrosine phosphatase 1 [Glycine max]                   47  3e-04
emb|CAB96212.1| CD45 [Takifugu rubripes]                               45  8e-04
emb|CAB96211.1| CD45 [Takifugu rubripes]                               45  8e-04
gb|AAB04150.1| protein tyrosine phosphatase gi|475902|emb|CAA836...    45  0.001

>gb|AAQ72837.1| CD45 [Ictalurus punctatus]
          Length = 1285

 Score = 48.9 bits (115), Expect = 7e-05
 Identities = 36/103 (34%), Positives = 56/103 (53%), Gaps = 2/103 (1%)
 Frame = +1

Query: 220 QELDPLLHTLPAVAPRIATMAESAQDVRRIALGILQARLMDARQIQDEYRSV--LGRDHN 393
           QELD LL T   +  R+  M+  A     +     + R  + R   +E++SV  +  +++
Sbjct: 587 QELDDLLPTNALL--RVEPMSAEA-----LLEAYKKKRADEGRLFMEEFQSVPRIFSNYS 639

Query: 394 IRASCHIAQAPGNAPKNRYVNVLPYDHNRVLLRTGRSGLPSAS 522
           +R     A+ P N PKNRYV++LPYD+NRV L  G +   +AS
Sbjct: 640 VRE----AKKPENQPKNRYVDILPYDYNRVTLSHGGTDYINAS 678

>emb|CAA06975.1| tyrosine phosphatase 1 [Glycine max]
          Length = 338

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
 Frame = +1

Query: 310 ALGILQARLMDARQIQDEYRSVLGR---DHNIRASCHIAQAPGNAPKNRYVNVLPYDHNR 480
           AL IL+ +L     I  E+  +         +R  C +A    N  KNRY +VLP+D NR
Sbjct: 43  ALNILKEKLHAPNVITQEFAHLQANRITPSEMRRRCTVAYDDVNLRKNRYTDVLPFDKNR 102

Query: 481 VLLRTGRSGLPSASRASNGCSSSGSSSGGNSGHI 582
           V+L++     P A    N    S SS+G  S  I
Sbjct: 103 VVLKSSTDYRPEAQGYINASLVSTSSAGNVSQFI 136

>emb|CAB96212.1| CD45 [Takifugu rubripes]
          Length = 1245

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
 Frame = +1

Query: 334 LMDA--RQIQDEYRSVLGRDHNI-----RASCHIAQAPGNAPKNRYVNVLPYDHNRVLLR 492
           L+DA  R+I DE R  L    +I     + +   A+   N PKNRYV++LPYD+NRV L 
Sbjct: 603 LLDAYKRKIADEGRLFLAEFQSIPRIFSKYTVKEAKKSHNVPKNRYVDILPYDYNRVQLT 662

Query: 493 TG 498
           TG
Sbjct: 663 TG 664

>emb|CAB96211.1| CD45 [Takifugu rubripes]
          Length = 1246

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
 Frame = +1

Query: 334 LMDA--RQIQDEYRSVLGRDHNI-----RASCHIAQAPGNAPKNRYVNVLPYDHNRVLLR 492
           L+DA  R+I DE R  L    +I     + +   A+   N PKNRYV++LPYD+NRV L 
Sbjct: 604 LLDAYKRKIADEGRLFLAEFQSIPRIFSKYTVKEAKKSHNVPKNRYVDILPYDYNRVQLT 663

Query: 493 TG 498
           TG
Sbjct: 664 TG 665

>gb|AAB04150.1| protein tyrosine phosphatase gi|475902|emb|CAA83657.1|
           protein-tyrosine-phosphatase alpha [Gallus gallus]
          Length = 807

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +1

Query: 394 IRASCHIAQAPGNAPKNRYVNVLPYDHNRVLLRTGRSGLPSA 519
           I+A+C  A    N  KNRYVN+LPYDH+RV L T   G+P +
Sbjct: 259 IQATCEAASKEENKEKNRYVNILPYDHSRVHL-TPVEGVPDS 299



EST assemble image


clone accession position
1 LCL036e09_r AV628091 1 553
2 LCL053b01_r AV629149 188 660
3 LCL047h04_r AV628841 190 503
4 LCL055a12_r AV629241 191 671




Chlamydomonas reinhardtii
Kazusa DNA Research Institute