KCC003187A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003187A_C01 KCC003187A_c01
ctgcattggtgcgtatcgcatttttATATTGTACCTGTGCTTAACACATAACCGACATTT
GATCGCGCAACCTTCTGCAAGTAAACCGTGAAAGATGCTTTCCAGGACCCGGGCTCCCTC
CTCATTGGCTCATTCCACCTGCGAAGCCCCCATGATACAGCTACCTGCAACAGTTGTGCA
ACGGAGGGCTCCCATTGGTGCCCCATCAGCGGTGGGAGCGTGCAACCCAGTCGCGGGTCG
GCATCGTGCAGCGCCAGCCCTTGCCAGTCGCACGCGGACCGTCGCTACGCCCGCGACAGC
TGCTCCAGCTGCCACTAGCACGCAGCAGGTGGCGGACGTCGAGAACGTTGTCATCATCGG
CTCGGGGCCAGCGGGATACACGGCTGCCATCTATGCCGCCCGAGCTAACCTCAAACCTGT
CGTGTTTGAGGGCTTCCGCAATGGTCGCGGCGGGCAGCTGATGACCACCACCGAGGTCGA
GAACTTCCCAGGTTTCCCTGAGGGCATCACCGGCCCTGACTTGATGGACCGCATGCGCAA
GCAGGCGGAGCGCTGGGGCAGCGAGCTGTACACTGAGGACGTGGAGCAGGTGGACCTGTC
CGTGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003187A_C01 KCC003187A_c01
         (607 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_565954.1| thioredoxin reductase, putative [Arabidopsis th...   156  2e-37
gb|AAL08250.1| At2g41680/T32G6.20 [Arabidopsis thaliana] gi|2330...   156  2e-37
pir||T00824 probable thioredoxin reductase At2g41680 [imported] ...   156  2e-37
ref|NP_484780.1| thioredoxin reductase [Nostoc sp. PCC 7120] gi|...   156  2e-37
emb|CAE46765.1| NADPH thioredoxin reductase [Oryza sativa (japon...   155  4e-37

>ref|NP_565954.1| thioredoxin reductase, putative [Arabidopsis thaliana]
           gi|20196949|gb|AAB84351.2| putative thioredoxin
           reductase [Arabidopsis thaliana]
          Length = 529

 Score =  156 bits (395), Expect = 2e-37
 Identities = 83/130 (63%), Positives = 98/130 (74%), Gaps = 9/130 (6%)
 Frame = +2

Query: 239 RHRAAPALASRTRT-------VATPATAAPAATSTQQVADVENVVIIGSGPAGYTAAIYA 397
           RH  +  L   TRT       +   ATA   ++S+     +ENVVIIGSGPAGYTAAIYA
Sbjct: 43  RHGGSYLLRQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYA 102

Query: 398 ARANLKPVVFEGFRNGR--GGQLMTTTEVENFPGFPEGITGPDLMDRMRKQAERWGSELY 571
           ARANLKPVVFEG++ G   GGQLMTTTEVENFPGFP+GITGPDLM++MRKQAERWG+ELY
Sbjct: 103 ARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRKQAERWGAELY 162

Query: 572 TEDVEQVDLS 601
            EDVE + ++
Sbjct: 163 PEDVESLSVT 172

>gb|AAL08250.1| At2g41680/T32G6.20 [Arabidopsis thaliana]
           gi|23308231|gb|AAN18085.1| At2g41680/T32G6.20
           [Arabidopsis thaliana]
          Length = 529

 Score =  156 bits (395), Expect = 2e-37
 Identities = 83/130 (63%), Positives = 98/130 (74%), Gaps = 9/130 (6%)
 Frame = +2

Query: 239 RHRAAPALASRTRT-------VATPATAAPAATSTQQVADVENVVIIGSGPAGYTAAIYA 397
           RH  +  L   TRT       +   ATA   ++S+     +ENVVIIGSGPAGYTAAIYA
Sbjct: 43  RHGGSYLLRQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYA 102

Query: 398 ARANLKPVVFEGFRNGR--GGQLMTTTEVENFPGFPEGITGPDLMDRMRKQAERWGSELY 571
           ARANLKPVVFEG++ G   GGQLMTTTEVENFPGFP+GITGPDLM++MRKQAERWG+ELY
Sbjct: 103 ARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRKQAERWGAELY 162

Query: 572 TEDVEQVDLS 601
            EDVE + ++
Sbjct: 163 PEDVESLSVT 172

>pir||T00824 probable thioredoxin reductase At2g41680 [imported] - Arabidopsis
           thaliana
          Length = 535

 Score =  156 bits (395), Expect = 2e-37
 Identities = 83/130 (63%), Positives = 98/130 (74%), Gaps = 9/130 (6%)
 Frame = +2

Query: 239 RHRAAPALASRTRT-------VATPATAAPAATSTQQVADVENVVIIGSGPAGYTAAIYA 397
           RH  +  L   TRT       +   ATA   ++S+     +ENVVIIGSGPAGYTAAIYA
Sbjct: 43  RHGGSYLLRQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYA 102

Query: 398 ARANLKPVVFEGFRNGR--GGQLMTTTEVENFPGFPEGITGPDLMDRMRKQAERWGSELY 571
           ARANLKPVVFEG++ G   GGQLMTTTEVENFPGFP+GITGPDLM++MRKQAERWG+ELY
Sbjct: 103 ARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRKQAERWGAELY 162

Query: 572 TEDVEQVDLS 601
            EDVE + ++
Sbjct: 163 PEDVESLSVT 172

>ref|NP_484780.1| thioredoxin reductase [Nostoc sp. PCC 7120] gi|25285003|pir||AG1898
           thioredoxin reductase [imported] - Nostoc sp. (strain
           PCC 7120) gi|17130082|dbj|BAB72694.1| thioredoxin
           reductase [Nostoc sp. PCC 7120]
          Length = 483

 Score =  156 bits (394), Expect = 2e-37
 Identities = 78/92 (84%), Positives = 84/92 (90%), Gaps = 2/92 (2%)
 Frame = +2

Query: 338 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGFRNGR--GGQLMTTTEVENFPGFPEGIT 511
           VEN+VIIGSGPAGYTAAIYAARANLKPVVFEGF+ G   GGQLMTTTEVENFPGFP+GIT
Sbjct: 33  VENLVIIGSGPAGYTAAIYAARANLKPVVFEGFQAGGLPGGQLMTTTEVENFPGFPQGIT 92

Query: 512 GPDLMDRMRKQAERWGSELYTEDVEQVDLSVR 607
           GP+LMDRM+ QAERWG+ELYTEDV  VDLS R
Sbjct: 93  GPELMDRMKAQAERWGAELYTEDVISVDLSQR 124

>emb|CAE46765.1| NADPH thioredoxin reductase [Oryza sativa (japonica
           cultivar-group)]
          Length = 488

 Score =  155 bits (392), Expect = 4e-37
 Identities = 84/125 (67%), Positives = 96/125 (76%), Gaps = 5/125 (4%)
 Frame = +2

Query: 248 AAPALASRTRTVATPAT--AAPAATSTQQVAD-VENVVIIGSGPAGYTAAIYAARANLKP 418
           AA   A   R  A PA    APA+     +   VEN+VIIGSGPAGYTAAIYAARANLKP
Sbjct: 9   AAALSAKALRASAAPAVDEEAPASPPPSDLGKGVENLVIIGSGPAGYTAAIYAARANLKP 68

Query: 419 VVFEGFRNGR--GGQLMTTTEVENFPGFPEGITGPDLMDRMRKQAERWGSELYTEDVEQV 592
           VVFEG++ G   GGQLMTTTEVENFPGFP+G+TGPDLMD+MRKQAERWG+EL+ EDVE V
Sbjct: 69  VVFEGYQVGGVPGGQLMTTTEVENFPGFPDGVTGPDLMDKMRKQAERWGAELHQEDVEFV 128

Query: 593 DLSVR 607
           ++  R
Sbjct: 129 NVKSR 133



EST assemble image


clone accession position
1 MXL091h04_r BP098344 1 478
2 LCL097b12_r AV631626 26 471
3 MXL053a02_r BP096116 34 458
4 LCL035e09_r AV628023 41 567
5 LCL065e01_r AV629759 49 262
6 MXL006f05_r BP093315 61 382
7 MXL053g07_r BP096157 225 606
8 LCL035e02_r AV628019 368 607




Chlamydomonas reinhardtii
Kazusa DNA Research Institute