KCC003184A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003184A_C01 KCC003184A_c01
GTTGATGCAGAGTACTAGACATCTAGTCTTTAGCTGCTAGATCACCCTTGACGCGAGACG
GTCTCCGATCGCAAGCACATTCCACTTCGCCCAACCCTCTTCGTTTCCGCCCACCCGTCA
AGATGAAGATTGCTTGCATCGGTGCTGGCTATGTCGGTGGCCCCACCATGGCCATGGTCG
CCCTGAAGTGCCCCGACATCGAGGTGGTCGTCGTTGATATCAACGAGGAGCGCATCAAGG
CCTGGAACAGCGACAAGCTGCCCATCTACGAGCCTGGCCTGCTGGAGGTTGTGCAGGAGG
CCCGCGGCCGCAACCTGTTCTTCTCCACGGACACCAAGAAGCACGTTGGCGAGGCTGACA
TCATCTTCGTCAGTGTGAACACCCCCACCAAGACCCACGGTATTGGTGCCGGCAAGGCCG
CCGACCTGACCTACTGGGAGGGTGCCGCCCGCCTGATTGCCTCGGTGTCCACCAGCAGCA
AGATCGTGGTTGAGAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003184A_C01 KCC003184A_c01
         (497 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM47595.1| putative UDP-glucose dehydrogenase [Sorghum bicolor]   208  3e-53
ref|NP_173979.1| UDP-glucose dehydrogenase -related [Arabidopsis...   207  6e-53
gb|AAK16194.1|AC079887_26 putative UDP-glucose dehydrogenase [Or...   207  7e-53
gb|AAO62313.1| UDP-glucose dehydrogenase [Colocasia esculenta]        205  2e-52
gb|AAM61009.1| UDP-glucose dehydrogenase, putative [Arabidopsis ...   205  2e-52

>gb|AAM47595.1| putative UDP-glucose dehydrogenase [Sorghum bicolor]
          Length = 217

 Score =  208 bits (529), Expect = 3e-53
 Identities = 100/125 (80%), Positives = 113/125 (90%)
 Frame = +3

Query: 123 MKIACIGAGYVGGPTMAMVALKCPDIEVVVVDINEERIKAWNSDKLPIYEPGLLEVVQEA 302
           +KI CIGAGYVGGPTMA++ALKCPDIEVVVVDI++ RI+AWNSD LPIYEPGL +VV++ 
Sbjct: 2   VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISKPRIEAWNSDTLPIYEPGLDDVVKQC 61

Query: 303 RGRNLFFSTDTKKHVGEADIIFVSVNTPTKTHGIGAGKAADLTYWEGAARLIASVSTSSK 482
           RG+NLFFSTD +KHV EADIIFVSVNTPTKT G+GAGKAADLTYWE AAR+IA VS S K
Sbjct: 62  RGKNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDK 121

Query: 483 IVVEK 497
           IVVEK
Sbjct: 122 IVVEK 126

>ref|NP_173979.1| UDP-glucose dehydrogenase -related [Arabidopsis thaliana]
           gi|25283960|pir||G86392 T1K7.6 protein - Arabidopsis
           thaliana gi|9797743|gb|AAF98561.1|AC013427_4 Strong
           similarity to UDP-Glucose 6-Dehydrogenase from Glycine
           max gb|6136119 and is a member of the
           UDP-glucose/GDP-mannose dehydrogenase PF|00984 family.
           ESTs gb|AV566422, gb|AV555903 come from this gene.
           [Arabidopsis thaliana] gi|17979522|gb|AAL50096.1|
           At1g26570/T1K7_6 [Arabidopsis thaliana]
           gi|23506003|gb|AAN28861.1| At1g26570/T1K7_6 [Arabidopsis
           thaliana]
          Length = 481

 Score =  207 bits (527), Expect = 6e-53
 Identities = 99/125 (79%), Positives = 114/125 (91%)
 Frame = +3

Query: 123 MKIACIGAGYVGGPTMAMVALKCPDIEVVVVDINEERIKAWNSDKLPIYEPGLLEVVQEA 302
           +KI CIGAGYVGGPTMA++ALKCP+IEVVVVDI+E RI AWNSD+LPIYEPGL +VV++ 
Sbjct: 2   VKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQC 61

Query: 303 RGRNLFFSTDTKKHVGEADIIFVSVNTPTKTHGIGAGKAADLTYWEGAARLIASVSTSSK 482
           RG+NLFFSTD +KHV E+DI+FVSVNTPTKT G+GAGKAADLTYWE AAR+IA VS SSK
Sbjct: 62  RGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSSK 121

Query: 483 IVVEK 497
           IVVEK
Sbjct: 122 IVVEK 126

>gb|AAK16194.1|AC079887_26 putative UDP-glucose dehydrogenase [Oryza sativa (japonica
           cultivar-group)]
          Length = 480

 Score =  207 bits (526), Expect = 7e-53
 Identities = 101/125 (80%), Positives = 112/125 (88%)
 Frame = +3

Query: 123 MKIACIGAGYVGGPTMAMVALKCPDIEVVVVDINEERIKAWNSDKLPIYEPGLLEVVQEA 302
           +KI CIGAGYVGGPTMA++ALKCP IEVVVVDI++ RI AWNS++LPIYEPGL EVV+E 
Sbjct: 2   VKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKEC 61

Query: 303 RGRNLFFSTDTKKHVGEADIIFVSVNTPTKTHGIGAGKAADLTYWEGAARLIASVSTSSK 482
           RGRNLFFSTD +KHV EADIIFVSVNTPTKT G+GAGKAADLTYWE AAR+IA VS S K
Sbjct: 62  RGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDK 121

Query: 483 IVVEK 497
           IVVEK
Sbjct: 122 IVVEK 126

>gb|AAO62313.1| UDP-glucose dehydrogenase [Colocasia esculenta]
          Length = 480

 Score =  205 bits (522), Expect = 2e-52
 Identities = 101/125 (80%), Positives = 111/125 (88%)
 Frame = +3

Query: 123 MKIACIGAGYVGGPTMAMVALKCPDIEVVVVDINEERIKAWNSDKLPIYEPGLLEVVQEA 302
           +KI CIGAGYVGGPTMA++ALKCP IEVVVVDI+  RI AWNSD+LPIYEPGL EVV++ 
Sbjct: 2   VKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISVVRIAAWNSDQLPIYEPGLDEVVKQC 61

Query: 303 RGRNLFFSTDTKKHVGEADIIFVSVNTPTKTHGIGAGKAADLTYWEGAARLIASVSTSSK 482
           RGRNLFFSTD +KHV EADIIFVSVNTPTKT G+GAGKAADLTYWE AAR+IA VS S K
Sbjct: 62  RGRNLFFSTDIEKHVSEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDK 121

Query: 483 IVVEK 497
           IVVEK
Sbjct: 122 IVVEK 126

>gb|AAM61009.1| UDP-glucose dehydrogenase, putative [Arabidopsis thaliana]
          Length = 481

 Score =  205 bits (522), Expect = 2e-52
 Identities = 98/125 (78%), Positives = 113/125 (90%)
 Frame = +3

Query: 123 MKIACIGAGYVGGPTMAMVALKCPDIEVVVVDINEERIKAWNSDKLPIYEPGLLEVVQEA 302
           +KI CIGAGYVGGPTMA++ALKCP+IEVVVVDI+E RI AWNSD+LPIYEPGL +VV++ 
Sbjct: 2   VKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQC 61

Query: 303 RGRNLFFSTDTKKHVGEADIIFVSVNTPTKTHGIGAGKAADLTYWEGAARLIASVSTSSK 482
           RG+NLFFSTD +KHV E+DI+FVSVNTPTKT G+GAGKAADLTYWE AAR+I  VS SSK
Sbjct: 62  RGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIPDVSKSSK 121

Query: 483 IVVEK 497
           IVVEK
Sbjct: 122 IVVEK 126



EST assemble image


clone accession position
1 LCL068e07_r AV629897 1 439
2 MX011b01_r BP086543 1 492
3 MX209g10_r BP089564 2 169
4 MX242b04_r BP091643 18 497
5 LCL034d07_r AV627952 21 350




Chlamydomonas reinhardtii
Kazusa DNA Research Institute