KCC003177A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003177A_C01 KCC003177A_c01
cgctgaatacgccaggtgcactacattgctgtaTACCAATCAAGCTTGCATATTGCAAGG
GTTTAGGAAGTCACGTTCTGCCATCAAGTGCGTCCCTTGGCCTTTCTGCTCCTTGTGCTC
GCCTGAAACAATGAGTGCACTTCTGGCTAGAAAAGCAGTGGTTCTGGGTCGTCCTCAACC
GGCTTGCACGAGGCCGCACCTTCAATTGCATCATCGCCGGCGAGTGGCTGTTTTGGGTGC
GCAAGATGGTGCTCGCAGCGAGGTTGTAATTGTGGACGCGCCAAGCTCGCAGAACGGCGT
CCACCATGACCCGGTTCCTGAGCCCGCGCCCGCGGCTGCCGCGCCTGCGCCGGAGCCAGC
TCCAACTGGCCCCATTGGCATTAAGATCGTTCCGGCTGCTGTGGCGATCGGCATCGGCTT
GGCCCTGCGTTTCGTGGTGCCTATCCCGGAGGGCATCACTGCACAGGCCTGGTCGCTGCT
ATCCATTTTCGTGTCCACCATCCTGGGTCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003177A_C01 KCC003177A_c01
         (511 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_201234.1| oxoglutarate/malate translocator, putative [Ara...    75  4e-13
ref|NP_201233.1| oxoglutarate/malate translocator, putative [Ara...    66  2e-10
gb|AAM89394.1| glutamate/malate translocator [Sorghum bicolor]         65  4e-10
gb|AAM89397.1| glutamate/malate translocator [Nicotiana tabacum]       65  6e-10
gb|AAM89395.1| glutamate/malate translocator [Flaveria bidentis]       64  1e-09

>ref|NP_201234.1| oxoglutarate/malate translocator, putative [Arabidopsis thaliana]
           gi|15810581|gb|AAL07178.1| putative
           2-oxoglutarate/malate translocator protein [Arabidopsis
           thaliana] gi|23397031|gb|AAN31801.1| putative
           2-oxoglutarate/malate translocator [Arabidopsis
           thaliana]
          Length = 563

 Score = 75.5 bits (184), Expect = 4e-13
 Identities = 36/68 (52%), Positives = 47/68 (68%)
 Frame = +2

Query: 308 DPVPEPAPAAAAPAPEPAPTGPIGIKIVPAAVAIGIGLALRFVVPIPEGITAQAWSLLSI 487
           D  P P P    P+P P+P+ P G K++P  ++I +GL LRF VP+PEG+T Q W LLSI
Sbjct: 75  DNAPPPPP----PSPSPSPS-PQGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSI 129

Query: 488 FVSTILGL 511
           F+STI GL
Sbjct: 130 FLSTIAGL 137

>ref|NP_201233.1| oxoglutarate/malate translocator, putative [Arabidopsis thaliana]
           gi|15028073|gb|AAK76567.1| putative
           2-oxoglutarate/malate translocator protein [Arabidopsis
           thaliana] gi|22136830|gb|AAM91759.1| putative
           2-oxoglutarate/malate translocator protein [Arabidopsis
           thaliana]
          Length = 549

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 28/54 (51%), Positives = 40/54 (73%)
 Frame = +2

Query: 350 PEPAPTGPIGIKIVPAAVAIGIGLALRFVVPIPEGITAQAWSLLSIFVSTILGL 511
           P P+P  P G K++P A+++ IGL +RF++P PE +T+Q W LLSIF+ TI GL
Sbjct: 70  PPPSPPQPQGAKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTISGL 123

>gb|AAM89394.1| glutamate/malate translocator [Sorghum bicolor]
          Length = 563

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 30/63 (47%), Positives = 45/63 (70%)
 Frame = +2

Query: 323 PAPAAAAPAPEPAPTGPIGIKIVPAAVAIGIGLALRFVVPIPEGITAQAWSLLSIFVSTI 502
           PAPA ++P P+P+     G K+VP  +++ +GLA+RF+ P P  ++ +AW LLSIF+STI
Sbjct: 80  PAPADSSPEPKPS-----GAKLVPLVISLAVGLAVRFLAPRPAEVSPRAWQLLSIFLSTI 134

Query: 503 LGL 511
            GL
Sbjct: 135 AGL 137

>gb|AAM89397.1| glutamate/malate translocator [Nicotiana tabacum]
          Length = 583

 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
 Frame = +2

Query: 281 PSSQNGVHHDPVPEPAPAAAAPAPEPAPT-----GPIGIKIVPAAVAIGIGLALRFVVPI 445
           P+S+N   H P+     A+++P P+   T      P G K++P  +++ IGL +RF VP 
Sbjct: 80  PTSKNSPSHKPIN----ASSSPDPDKVVTIDAKPKPQGAKLIPLIISVSIGLIVRFFVPK 135

Query: 446 PEGITAQAWSLLSIFVSTILGL 511
           P  ++ QAW LLSIF+STI GL
Sbjct: 136 PPEVSPQAWQLLSIFLSTIAGL 157

>gb|AAM89395.1| glutamate/malate translocator [Flaveria bidentis]
          Length = 563

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 35/70 (50%), Positives = 43/70 (61%)
 Frame = +2

Query: 302 HHDPVPEPAPAAAAPAPEPAPTGPIGIKIVPAAVAIGIGLALRFVVPIPEGITAQAWSLL 481
           H  P+   + A+A    EP      G KIVP  ++I IGL +RFVVP P  +T QAW LL
Sbjct: 69  HIKPI-SASSASATSITEPKKAQLQGAKIVPLTLSIAIGLLVRFVVPKPVEVTPQAWQLL 127

Query: 482 SIFVSTILGL 511
           SIF+STI GL
Sbjct: 128 SIFISTIAGL 137



EST assemble image


clone accession position
1 LCL032b07_r AV627795 1 493
2 LCL095d11_r AV631517 34 511
3 LCL062c10_r AV629630 48 527
4 LCL042g07_r AV628497 53 319




Chlamydomonas reinhardtii
Kazusa DNA Research Institute