>KCC003176A_C01 KCC003176A_c01
cgcaACGCTTTCACACATCGCACAATACTCTGAACTTACAAAGTTCTGTGCGTCGGGCCA
AAGGCCCGGCTCTGGGCCTGGCTGCCTTCTTATTCTTCAGTCCAGATAACCCCAGAACAC
ATCAAGCATCGCTTAGGAGTTAGCATATAAGTAGCTTTCGCGTTGCCAAGCAGGCTCTCA
AGGCAATGGCGCAGACTATCCCGCAGAGCCATCCCATCTCCGCGGACCAGGTGCGGAACA
ATGCGGGAGGCTTCGTATTCAAGGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCC
TCGGTTCTGATGCCAACAACTACTACGTCTCGCGTAAGTCGGTGGACCTGGCGTCTGCCC
AGTGCGTGGCGCGGCTGCTGGCGGCGGCGCAAGGCGAGGCGGTGGTGAATGAGCTCGTCG
ACATCAGCCGGGA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003176A_C01 KCC003176A_c01
         (433 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA qual...    63  1e-09
ref|NP_818270.1| gp220 [Mycobacteriophage Bxz1] gi|29425428|gb|A...    59  2e-08
sp|P42700|RO60_XENLA 60-kDa SS-A/Ro ribonucleoprotein (60 kDa Ro...    59  2e-08
gb|AAH52380.1| Unknown (protein for IMAGE:5697399) [Mus musculus]      58  3e-08
ref|XP_222686.1| similar to Mus musculus 60kDa SS-A/Ro [Rattus n...    58  3e-08

>ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA quality control
           checkpoint (72.8 kD) (rop-1) [Caenorhabditis elegans]
           gi|12643738|sp|Q27274|RO60_CAEEL 60-kDa SS-A/Ro
           ribonucleoprotein homolog gi|7511637|pir||T19225 Ro
           autoantigen 60K homolog - Caenorhabditis elegans
           gi|784872|gb|AAC41575.1| Ro ribonucleoprotein
           autoantigen gi|905359|gb|AAA96949.1| ribonucleoprotein
           Ro autoantigen homolog gi|3874263|emb|CAA98241.1| C.
           elegans ROP-1 protein (corresponding sequence C12D8.11)
           [Caenorhabditis elegans] gi|3880715|emb|CAA16325.1| C.
           elegans ROP-1 protein (corresponding sequence C12D8.11)
           [Caenorhabditis elegans] gi|1586552|prf||2204248A 60kD
           Ro autoantigen
          Length = 643

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 30/75 (40%), Positives = 46/75 (61%)
 Frame = +3

Query: 204 QSHPISADQVRNNAGGFVFKVDDLTLLRRYIILGSDANNYYVSRKSVDLASAQCVARLLA 383
           Q   +   QV NNAGGFVF V D T +RR++ILGSD  +Y+ S + + + +AQ + +++ 
Sbjct: 54  QMEKVKDGQVENNAGGFVFPVSDETQVRRFLILGSDKGSYHQSSEKITIDNAQRIIKIIE 113

Query: 384 AAQGEAVVNELVDIS 428
              G  V+ EL  I+
Sbjct: 114 QGNGHMVLKELALIN 128

>ref|NP_818270.1| gp220 [Mycobacteriophage Bxz1] gi|29425428|gb|AAN16852.1| gp220
           [Mycobacteriophage Bxz1]
          Length = 552

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 30/76 (39%), Positives = 47/76 (61%)
 Frame = +3

Query: 201 PQSHPISADQVRNNAGGFVFKVDDLTLLRRYIILGSDANNYYVSRKSVDLASAQCVARLL 380
           PQS P   DQVRN AGGF ++  D   L R++ LG+D   YY + + +   +A+ V R++
Sbjct: 14  PQSQPRIPDQVRNAAGGFAYRTGDELRLHRFLTLGTDGGTYYTNARDLTKDNAEVVLRMV 73

Query: 381 AAAQGEAVVNELVDIS 428
            A +G   V+++V+IS
Sbjct: 74  -ADKGLYTVSQIVEIS 88

>sp|P42700|RO60_XENLA 60-kDa SS-A/Ro ribonucleoprotein (60 kDa Ro protein) (60 kDa
           ribonucleoprotein Ro) (RoRNP) gi|2134151|pir||I51560
           ribonucleoprotein - African clawed frog
           gi|295536|gb|AAC38001.1| ribonucleoprotein [Xenopus
           laevis]
          Length = 538

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 27/82 (32%), Positives = 48/82 (57%)
 Frame = +3

Query: 186 MAQTIPQSHPISADQVRNNAGGFVFKVDDLTLLRRYIILGSDANNYYVSRKSVDLASAQC 365
           M  T+ Q+ P++  QV N+ G +V++V D+  LRR++  GS+   YY+  K +   +A+ 
Sbjct: 1   MEATMDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEA 60

Query: 366 VARLLAAAQGEAVVNELVDISR 431
           + RL+   +G  VV E+   S+
Sbjct: 61  LLRLIEDGKGCEVVQEIKTFSQ 82

>gb|AAH52380.1| Unknown (protein for IMAGE:5697399) [Mus musculus]
          Length = 547

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 28/87 (32%), Positives = 49/87 (56%)
 Frame = +3

Query: 171 QALKAMAQTIPQSHPISADQVRNNAGGFVFKVDDLTLLRRYIILGSDANNYYVSRKSVDL 350
           Q  + M  +  Q  P+S  QV N+ GG V++V D+  LRR++  GS+   YY+  + + L
Sbjct: 5   QETRNMEGSANQLQPLSETQVVNSEGGCVWQVTDMNRLRRFLCFGSEGGTYYIKEQKLGL 64

Query: 351 ASAQCVARLLAAAQGEAVVNELVDISR 431
            +A+ + RL+   +G  V+ E+   S+
Sbjct: 65  ENAEALIRLIEDGRGCEVIQEIKSFSQ 91

>ref|XP_222686.1| similar to Mus musculus 60kDa SS-A/Ro [Rattus norvegicus]
          Length = 538

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 25/82 (30%), Positives = 48/82 (58%)
 Frame = +3

Query: 186 MAQTIPQSHPISADQVRNNAGGFVFKVDDLTLLRRYIILGSDANNYYVSRKSVDLASAQC 365
           M ++  Q  P+S +QV N+ GG+V++V D+  L R++  GS+    Y+  + + L +A+ 
Sbjct: 1   MEESANQLQPLSDNQVANSEGGYVWQVTDMNRLHRFLCFGSEGGTCYIKEQKLGLENAEA 60

Query: 366 VARLLAAAQGEAVVNELVDISR 431
           + RL+   +G  V+ E+   S+
Sbjct: 61  LIRLIEDGRGSEVIQEIKSFSQ 82

EST assemble image

clone accession position 1 LCL097a02_r AV631614 1 212 2 LCL081b11_r AV630590 5 128 3 LCL047c09_r AV628801 21 433 4 LCL031h05_r AV627777 30 272

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