KCC003173A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003173A_C01 KCC003173A_c01
cgtggcggcagggcagagcttaggaggcactgcagacgctggctacttcgcggacatctt
atcatccgccctctacggcaTGACCTTCACGCTGTACGATGGCGTCGACGTGGCCATGAG
GCTTGTCTCTCACGCAAGGGCCAACGGATTCAGGGGCGAGGTCAGGCACGTGTCGACATT
ACGCTCCGACTTCACGCTTCTGCTGGACACTGATGACGAGGCAAGCAAGCAAACATTCAA
GCGCTTCGTGAAGTGGCTGGCGACACAGGTGCCGGTCCGCGCCCCTGGCGCACAGGCGAA
TACGGCGTTTGCGAAAGCAGCGGAAGAGGACGCCGCGCGGGTGGAGGTGACGTCGGACCC
GTTCAACCCTCTCACCCGCGACCGGGAGCTGCTGGACATGTACAACCAnGGGCCGCTGAC
CGTCTACGCTACTACGGAGGTGCGGCGGGCGCTGCAGAAAGCTAACACGGCAGCGGAGCA
GTGGGAACGGCTCAGCCAATCCAGCCTGGGCACGTCGAGAGTGTCTCGGTCGCACGCCGA
GTGATGGTGGTGTCATTTGGGCAGCTGGAAGCTGTGGGAGGCAACAAGGCGGGGTAGTGG
GCTTTTGGGGATACAGGGATTGGTGGCGGGCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003173A_C01 KCC003173A_c01
         (634 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD45972.1|AF106062_1 Wiskott-Aldrich syndrome protein intera...    46  5e-04
emb|CAE45928.1| hypothetical protein [Homo sapiens]                    46  5e-04
ref|NP_694778.1| Wiskott-Aldrich syndrome protein interacting pr...    46  5e-04
gb|AAK21965.1| receptor protein kinase PERK1 [Brassica napus]          45  7e-04
gb|AAD41594.1|AF071081_1 proline-rich mucin homolog [Mycobacteri...    45  9e-04

>gb|AAD45972.1|AF106062_1 Wiskott-Aldrich syndrome protein interacting protein [Homo sapiens]
          Length = 312

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 50/163 (30%), Positives = 66/163 (39%), Gaps = 4/163 (2%)
 Frame = -3

Query: 629 PPPIPVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVP-TAPLPC*LSA 453
           PPP+   P  H  A+ PP   +       T R + +    P     + P   PLP   S 
Sbjct: 77  PPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSG 136

Query: 452 APAAPP**RRRSAAXGCTCPA-APGRG*EG*TGPTSPPPARRPLPLLSQTPYSPVRQGR- 279
               P   +R  +    T P  +PGR     +GP  PPP+ RP P +   P      GR 
Sbjct: 137 NDETPRLPQRNLSLSSSTPPLPSPGR-----SGPLPPPPSERPPPPVRDPP------GRS 185

Query: 278 GPAPVSPATSRSA*MFACLP-RHQCPAEA*SRSVMSTRA*PRP 153
           GP P  P  SR+      LP   Q P+ +    V S R+ PRP
Sbjct: 186 GPLPPPPPVSRNGSTSRALPATPQLPSRS---GVDSPRSGPRP 225

>emb|CAE45928.1| hypothetical protein [Homo sapiens]
          Length = 510

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 50/163 (30%), Positives = 66/163 (39%), Gaps = 4/163 (2%)
 Frame = -3

Query: 629 PPPIPVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVP-TAPLPC*LSA 453
           PPP+   P  H  A+ PP   +       T R + +    P     + P   PLP   S 
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSG 327

Query: 452 APAAPP**RRRSAAXGCTCPA-APGRG*EG*TGPTSPPPARRPLPLLSQTPYSPVRQGR- 279
               P   +R  +    T P  +PGR     +GP  PPP+ RP P +   P      GR 
Sbjct: 328 NDETPRLPQRNLSLSSSTPPLPSPGR-----SGPLPPPPSERPPPPVRDPP------GRS 376

Query: 278 GPAPVSPATSRSA*MFACLP-RHQCPAEA*SRSVMSTRA*PRP 153
           GP P  P  SR+      LP   Q P+ +    V S R+ PRP
Sbjct: 377 GPLPPPPPVSRNGSTSRALPATPQLPSRS---GVDSPRSGPRP 416

>ref|NP_694778.1| Wiskott-Aldrich syndrome protein interacting protein; WASP
           interacting protein [Mus musculus]
           gi|22035765|emb|CAD24773.1| WASP interacting protein
           [Mus musculus] gi|26326969|dbj|BAC27228.1| unnamed
           protein product [Mus musculus]
           gi|29436754|gb|AAH49788.1| Wiskott-Aldrich syndrome
           protein interacting protein [Mus musculus]
          Length = 493

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 50/167 (29%), Positives = 65/167 (37%), Gaps = 8/167 (4%)
 Frame = -3

Query: 629 PPPIPVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVPTAPLPC*LSAA 450
           PPP+   P  H  A+ PP + +       T R        PG    A P  P P      
Sbjct: 260 PPPVGNRPSMHREAVPPPPSQTSKPPVPSTPR--------PGLGSQAPPPPPPPSRPGPP 311

Query: 449 PAAP------P**RRRSAAXGCTCPAAPGRG*EG*TGPTSPPPARRPLPLLSQTPYSPVR 288
           P  P      P   +R+ +   + P  P     G +GP  PPP+ RP P +   P     
Sbjct: 312 PLPPASNDEIPRLPQRNLSLTSSAPPLPS---PGRSGPLPPPPSERPPPPVRDPP----- 363

Query: 287 QGR-GPAPVSPATSRSA*MFACLPRHQCPAEA*SRSVM-STRA*PRP 153
            GR GP P  P  +R+      LP      +  SRS M S R+ PRP
Sbjct: 364 -GRSGPLPPPPPINRNGSTARALP---ATPQLPSRSGMDSPRSGPRP 406

>gb|AAK21965.1| receptor protein kinase PERK1 [Brassica napus]
          Length = 647

 Score = 45.4 bits (106), Expect = 7e-04
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
 Frame = -3

Query: 617 PVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVPTAPLPC*LS-AAPAA 441
           P SP ++     PP AS+ P  T  +     T+ T P     + P+AP P   + + P +
Sbjct: 12  PPSPPSNSTTTTPPPASAPPPTTPSSPPPPSTIPTSPPPSSRSTPSAPPPSPPTPSTPGS 71

Query: 440 PP**RRRSAAXGCTCPAAPGRG*EG*TGPTSP--PPARRPLPLLSQTPYSPVRQGRGPAP 267
           PP   + S       P  PG        P +P  PP R P P +   P +P R+G  P P
Sbjct: 72  PPPLPQPSPPA----PTTPG-------SPPAPVTPPTRNPPPSVPGPPSNPSREGGSPRP 120

Query: 266 VS 261
            S
Sbjct: 121 PS 122

>gb|AAD41594.1|AF071081_1 proline-rich mucin homolog [Mycobacterium tuberculosis]
          Length = 763

 Score = 45.1 bits (105), Expect = 9e-04
 Identities = 55/167 (32%), Positives = 64/167 (37%), Gaps = 5/167 (2%)
 Frame = -3

Query: 629 PPPIPVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVPTAPLPC*LSAA 450
           PP  P +P+A  PAL PP   S P        AT      P       P+ P P    A 
Sbjct: 508 PPAPPAAPRASMPAL-PPAPPSPP--------ATRLCPPLP-------PSPPAPNSPPAP 551

Query: 449 PAAPP**RRRSAAXGCT-CPAAPGRG*EG*TGPTSPP--PARRPLPLLSQTPYSPVRQGR 279
           PA P   +  SA   C   P AP R       P +PP  PA   LP     P  PV    
Sbjct: 552 PAPPTPPKLLSANPPCPPVPPAPNR-------PPAPPAPPAPPELPAPPDPPTPPVANSP 604

Query: 278 GPAPVSPATSRSA*MFACLPRHQCPAEA*SRSVM--STRA*PRP*IR 144
            PAP +P    SA  F   P    PA   SR  +  +  A P P +R
Sbjct: 605 -PAPPAPPAPPSALPFVNPPAPPTPAAPKSRPALPAAPPAPPAPPVR 650

 Score = 35.4 bits (80), Expect = 0.69
 Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
 Frame = -3

Query: 626 PPIPVSPK--AHYPALLPPTASSCP---NDTTITRRATETLSTCPGWIG*AVPTAPLPC* 462
           PP+P SP      PA L P A   P   N   +         T P     A P  P+P  
Sbjct: 141 PPVPNSPPFPPFPPAALNPPAPPAPPLANSPPLPPAPPTPAGTPP-----AAPWPPVPAA 195

Query: 461 LSAAPAAPP**RRRSAAXGCTCPAAPGR------------G*EG*TGPTSPPPARRPLPL 318
             + PA+PP    R  A     PA P                E    P +PP    P+P+
Sbjct: 196 PKSKPASPP----RPPAP--PMPATPMEFPPLPPVPPDPISKETPPAPPAPPIPPAPVPI 249

Query: 317 LSQTPYSPVRQGRGPAPVSPATSRSA*MFACLP 219
               P  PV     PAP +P  + +A + A  P
Sbjct: 250 PPVPPLPPVPNKIPPAPPAPPVAVAAVLVAPCP 282

 Score = 35.0 bits (79), Expect = 0.90
 Identities = 40/133 (30%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
 Frame = -3

Query: 629 PPPIPVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVPTAPLPC*LSAA 450
           PP  P  P+     +LPP  S  P++        E     P       P  P P   SA 
Sbjct: 442 PPLAPAPPEPKTVPVLPPGPSCPPSEKPNPPAPPEPPE--PKSSPALPPAPPAPSMPSAV 499

Query: 449 --PAAPP**RRRSAAXGCTCPAAPGRG*EG*TGPTSP-PPARRPLPLLSQTPYSPVRQGR 279
             P +PP      AA   + PA P         P  P PPA R  P L  +P +P     
Sbjct: 500 RVPPSPPIPPAPPAAPRASMPALP---------PAPPSPPATRLCPPLPPSPPAPNSPPA 550

Query: 278 GPAPVSPATSRSA 240
            PAP +P    SA
Sbjct: 551 PPAPPTPPKLLSA 563

 Score = 31.6 bits (70), Expect = 10.0
 Identities = 34/125 (27%), Positives = 44/125 (35%), Gaps = 2/125 (1%)
 Frame = -3

Query: 626 PPIPVSPKAHYPALLPPTASSCPNDTTITRRATETLSTCPGWIG*AVPTAPLPC*LSAAP 447
           PP P +PK      +PP  +S P                P  +  + P  P P      P
Sbjct: 126 PPFPPAPKFVPAPPVPPVPNSPPFPPFPPAALNPPAPPAPP-LANSPPLPPAP----PTP 180

Query: 446 AAPP**RRRSAAXGCTCPAAPGRG*EG*TGPTSPPPARRPL--PLLSQTPYSPVRQGRGP 273
           A  P      AA     PAAP         P +PP    P+  P L   P  P+ +   P
Sbjct: 181 AGTP-----PAAPWPPVPAAPKSKPASPPRPPAPPMPATPMEFPPLPPVPPDPISKETPP 235

Query: 272 APVSP 258
           AP +P
Sbjct: 236 APPAP 240



EST assemble image


clone accession position
1 LCL031b12_r AV627728 1 295
2 MXL066d07_r BP096881 153 635




Chlamydomonas reinhardtii
Kazusa DNA Research Institute