KCC003169A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003169A_C01 KCC003169A_c01
gagagagagaactagtctcgagttttttttttttttttttCCGTGGCGGAGGATTACCGG
TTCGGTTGTAGCGCATGACAGAGCCCTGCAACCACTGAACCTACGACCCGGTGCCACACT
AAGCCCTTGGCTAAGCCGCCTATCACGCGCTCTCACTCCCAGCCTCCCCCGGCGACGGCG
CCGCAAATGGCAGCAGTGTGTGGCGCCGTGTGGCAGCGTGCACCATACCTTTGCTGTGAT
GAGCCCCGCTCGGCCCCTGCCAAGCGCCCCCACATCTACTCCCCACCCCGAAACCACGTT
CCACACAACGGCACAACACATATTATGGTGCCTTCGCCCGCCCGCTTAGATAGCGCGGCA
GCCCTAGTTGGGCTTGGCGGGAGCTTGATCGCATTGTGGGCCTACATGTTGGACCGCCTG
GAAGGCTAGGATACGATGAGGTTCACGGCGCGCAGGGCAGCCCATTACCCACCACCCACG
CGCCCCTTACGCTGTGAACCACGAGCCCCAACGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003169A_C01 KCC003169A_c01
         (514 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_290770.2| KIAA1447 protein [Homo sapiens]                       41  0.010
dbj|BAB03062.1| contains similarity to cell wall-plasma membrane...    40  0.017
ref|NP_629426.1| putative 2-oxoglutarate dehydrogenase [Streptom...    38  0.066
emb|CAA78394.1| pistil extensin like protein, partial CDS [Nicot...    38  0.086
dbj|BAB97516.1| Hypothetical protein [Corynebacterium glutamicum...    38  0.086

>ref|XP_290770.2| KIAA1447 protein [Homo sapiens]
          Length = 174

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 29/96 (30%), Positives = 36/96 (37%)
 Frame = +1

Query: 85  PATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAPAK 264
           P  + P   C   PLA+PP       PPPA+AP               LCC  P S P  
Sbjct: 62  PPASSPACPCPLPPLARPPPPPQAPCPPPASAPPTTRTRPTAQTTRTRLCCCRPAS-PTP 120

Query: 265 RPHIYSPPRNHVPHNGTTHIMVPSPARLDSAAALVG 372
            P  +  PR   P          +  R+ SAA+  G
Sbjct: 121 CPPSWPSPRPCAPR-------AAALTRMPSAASCPG 149

>dbj|BAB03062.1| contains similarity to cell wall-plasma membrane linker
            protein~gene_id:MKA23.5 [Arabidopsis thaliana]
          Length = 1480

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = +1

Query: 79   QSPATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAP 258
            +SP  T PT    T P+A PPI +     PP TAP  A    A     P +      + P
Sbjct: 782  KSPVATPPTA---TPPVATPPIAKPPVATPPTTAPPTATPPVA----KPPVATPPIATPP 834

Query: 259  AKRPHIYSPPRNH----VPHNGTTHIMVPSPAR 345
              +P I +PP +      P   T  I  P PA+
Sbjct: 835  TAKPPILTPPISKPPVATPPAATPPITTPPPAK 867

 Score = 37.7 bits (86), Expect = 0.086
 Identities = 27/95 (28%), Positives = 38/95 (39%), Gaps = 6/95 (6%)
 Frame = +1

Query: 79  QSPATTEPTTR--CHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRS 252
           +SP  T PT      T P+AKPP+    +  PP   P +A          P +      +
Sbjct: 532 KSPVATPPTATPPVATPPIAKPPVVTPPTTTPPTATPPVA---------KPPVATPPIAT 582

Query: 253 APAKRPHIYSPPRNH----VPHNGTTHIMVPSPAR 345
            P  +P I +PP +      P   T  I  P PA+
Sbjct: 583 PPTAKPPISTPPISKSPVATPPAATPPITTPPPAK 617

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 30/91 (32%), Positives = 38/91 (40%), Gaps = 4/91 (4%)
 Frame = +1

Query: 85  PATTEPTTRCHTKPLAKPPI-TRSHSQPPPATAPQMAAVCGAVWQRAPYLCCD---EPRS 252
           P TT PTT   T P+AKPPI T   S PP AT P        +    P +       P  
Sbjct: 286 PVTTPPTT---TPPIAKPPIATPPISTPPAATPPAATPPITTLPPAKPPVAISPIVTPPV 342

Query: 253 APAKRPHIYSPPRNHVPHNGTTHIMVPSPAR 345
            P  +P + +PP    P   T  I  P  ++
Sbjct: 343 TPIAQPPVATPP-TATPPVATPPIATPPTSK 372

 Score = 35.0 bits (79), Expect = 0.56
 Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
 Frame = +1

Query: 79  QSPATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQ-RAPYLCCDEPRSA 255
           +SP  T PT    T P+A PPI +     PP T P  A    A      P +        
Sbjct: 412 KSPIATPPTA---TPPVATPPIEKPPVATPPTTTPPTATPPVAKPPVETPPIATPPTAKP 468

Query: 256 PAKRPHIYSPPRNHVPHNGTTHIMVPSPAR 345
           P   P I  PP    P   T  I  P+P +
Sbjct: 469 PISTPPISKPP-VATPPAATPPITTPTPVK 497

 Score = 34.3 bits (77), Expect = 0.95
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
 Frame = +1

Query: 85   PATTEPTTR--CHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRA-----------P 225
            P  T P  +    T P+A PPI +S   PPP   P +A    A    A           P
Sbjct: 1245 PVATPPIVKPPIVTPPIATPPIAKSPIAPPPIGTPPIAKPPVATPPTATPPVATSPIAKP 1304

Query: 226  YLCCDEPRSAPAKRPHIYSPPRNHVPHNGTTHIMVPSPAR 345
             +    P + P  +P + +PP    P   T  I  P  AR
Sbjct: 1305 PVATPPPATPPVAKPPVATPP-TVTPPVATPPIAKPPGAR 1343

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 85   PATTEPTTRCH--TKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAP 258
            P  T PT      T P+AKPP T   +  PP   P +A    A     P +      + P
Sbjct: 954  PVVTPPTATSPVATPPIAKPPTTTPPTATPPVAMPPIATPPTA----KPPVATPPIANPP 1009

Query: 259  AKRPHIYSPP 288
             ++P + +PP
Sbjct: 1010 VEKPPVATPP 1019

 Score = 32.3 bits (72), Expect = 3.6
 Identities = 23/83 (27%), Positives = 32/83 (37%)
 Frame = +1

Query: 85  PATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAPAK 264
           P T +P     T P+A PP+    +Q PP   P +A    A     P +      + P  
Sbjct: 188 PPTHKPPPCTPTPPVASPPMATPPTQMPPIATPPIAKSPVA----TPPIATPPTATPPIT 243

Query: 265 RPHIYSPPRNHVPHNGTTHIMVP 333
            P + +PP    P      IM P
Sbjct: 244 IPPVATPPITTPPIANPPIIMPP 266

 Score = 32.0 bits (71), Expect = 4.7
 Identities = 21/68 (30%), Positives = 27/68 (38%)
 Frame = +1

Query: 85  PATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAPAK 264
           P  T PT    T P+A PPI +S    PP   P +A    A     P +      + P  
Sbjct: 514 PVVTPPTA---TPPIATPPIAKSPVATPPTATPPVATPPIA----KPPVVTPPTTTPPTA 566

Query: 265 RPHIYSPP 288
            P +  PP
Sbjct: 567 TPPVAKPP 574

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +1

Query: 85  PATTEPTTR--CHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAP 258
           P  T PT      T P+AKPP T   +  PP   P +A    A     P +        P
Sbjct: 704 PVVTPPTATPPVATPPIAKPPTTIPPTATPPVAMPPIATPPTA----KPPIATPPIAIPP 759

Query: 259 AKRPHIYSPP 288
             +P + +PP
Sbjct: 760 VAKPPVVTPP 769

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 22/71 (30%), Positives = 27/71 (37%), Gaps = 3/71 (4%)
 Frame = +1

Query: 85  PATTEPTTR--CHTKPLAKPPI-TRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSA 255
           P  T PT      T P+AKPP+ T     PPPA  P             P +      + 
Sbjct: 634 PVATPPTATPPIATSPVAKPPVATPPIKTPPPAKPPVAIPPIATPPVAKPPVATPPTATP 693

Query: 256 PAKRPHIYSPP 288
           P   P I +PP
Sbjct: 694 PIATPPIATPP 704

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +1

Query: 118 TKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAPAKRPHIYSPPRNH 297
           T P+AKPP+    +  PP   P +A          P +      + P   P I  PP   
Sbjct: 677 TPPVAKPPVATPPTATPPIATPPIA---------TPPVVTPPTATPPVATPPIAKPPTT- 726

Query: 298 VPHNGTTHIMVP 333
           +P   T  + +P
Sbjct: 727 IPPTATPPVAMP 738

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 23/87 (26%), Positives = 34/87 (38%), Gaps = 2/87 (2%)
 Frame = +1

Query: 85   PATTEPTTRCHT--KPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAP 258
            P  T P  +  T   P+AKPP+  S +  PP   P +A          P +        P
Sbjct: 1014 PVATPPIAKPPTVLPPIAKPPVETSPTATPPTATPPVA---------IPPVVKPPVAIPP 1064

Query: 259  AKRPHIYSPPRNHVPHNGTTHIMVPSP 339
              +P + +PP  + P      I+ P P
Sbjct: 1065 ITKPPVATPPVTN-PPTAMPPIVTPPP 1090

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 22/71 (30%), Positives = 29/71 (39%), Gaps = 3/71 (4%)
 Frame = +1

Query: 85   PATTEPTTR--CHTKPLAKPPITRSH-SQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSA 255
            P TT P  +    T P+A PPI +   + PP AT P   +         P +    P   
Sbjct: 859  PITTPPPAKPPVATPPIATPPIAKPPVATPPTATPPIATSPVAKPPVAIPPIKTPPPAKP 918

Query: 256  PAKRPHIYSPP 288
            P   P I +PP
Sbjct: 919  PVAIPPIATPP 929

>ref|NP_629426.1| putative 2-oxoglutarate dehydrogenase [Streptomyces coelicolor
           A3(2)] gi|9909917|emb|CAC04496.1| putative
           2-oxoglutarate dehydrogenase [Streptomyces coelicolor
           A3(2)]
          Length = 1272

 Score = 38.1 bits (87), Expect = 0.066
 Identities = 27/82 (32%), Positives = 38/82 (45%)
 Frame = +1

Query: 19  RVFFFFFSVAEDYRFGCSA*QSPATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAV 198
           R ++ FF+   DY+ G +A  + A T PT    T P A  P  ++ +QP  A      A 
Sbjct: 52  RAWWDFFA---DYKPGAAATPTAAGTVPTDAGSTPPAAPAPRAQAPAQPQAAAPAPAPAK 108

Query: 199 CGAVWQRAPYLCCDEPRSAPAK 264
             A    AP     +P +APAK
Sbjct: 109 PAAAAPAAPAAPATKPAAAPAK 130

>emb|CAA78394.1| pistil extensin like protein, partial CDS [Nicotiana tabacum]
          Length = 155

 Score = 37.7 bits (86), Expect = 0.086
 Identities = 29/94 (30%), Positives = 38/94 (39%)
 Frame = +1

Query: 61  FGCSA*QSPATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCD 240
           FG S  +SP++  P      KP   PP     S PPPA +P           ++P     
Sbjct: 51  FGKSPKKSPSSPTPVN----KPSPSPPPQVKSSLPPPAKSPPPPPA------KSPPPLLP 100

Query: 241 EPRSAPAKRPHIYSPPRNHVPHNGTTHIMVPSPA 342
            P S P K+P    PP    P +    I  PSP+
Sbjct: 101 PPPSQPPKQPPPPPPPPAKQPPSAKPPIKPPSPS 134

>dbj|BAB97516.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
          Length = 268

 Score = 37.7 bits (86), Expect = 0.086
 Identities = 29/97 (29%), Positives = 37/97 (37%)
 Frame = +1

Query: 82  SPATTEPTTRCHTKPLAKPPITRSHSQPPPATAPQMAAVCGAVWQRAPYLCCDEPRSAPA 261
           S A    +T   T   A P    S   P P T     +V  A     P LC   PR AP 
Sbjct: 3   SRALKASSTHSTTSIFAPPSNGTSWDFPNPPTRCPFCSVTCATPLTPPLLCHLNPRHAPL 62

Query: 262 KRPHIYSPPRNHVPHNGTTHIMVPSPARLDSAAALVG 372
             PHI +  R+  P + T       P+  D  A ++G
Sbjct: 63  TDPHIDASRRHRGPFHATPSYAGFHPSFTDDTARMLG 99



EST assemble image


clone accession position
1 LCL029h11_r AV627644 1 514
2 LCL079c10_r AV630467 40 235




Chlamydomonas reinhardtii
Kazusa DNA Research Institute