Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003167A_C01 KCC003167A_c01
(564 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF36540.1| GR AF-1 specific histone deacetylase [Homo sapiens] 64 1e-09
pir||T46284 hypothetical protein DKFZp566E044.1 - human gi|68080... 64 1e-09
gb|AAH13737.1| HDAC6 protein [Homo sapiens] 64 1e-09
dbj|BAC86838.1| unnamed protein product [Homo sapiens] 64 1e-09
sp|Q9UBN7|HDA6_HUMAN Histone deacetylase 6 (HD6) gi|3776071|emb|... 64 1e-09
>gb|AAF36540.1| GR AF-1 specific histone deacetylase [Homo sapiens]
Length = 1066
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +3
Query: 306 ARVGLVFEDSMLKH--LGPSSHPECPERAVELMAALKRHGLDKRCVPLQPRQATDEELLR 479
+R GLV++ +M+ H L S HPE P+R + +M L+ GL RC+ L PR AT+ ELL
Sbjct: 330 SRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLT 389
Query: 480 CHQPEHLRKVAAVSE 524
CH E++ + A +
Sbjct: 390 CHSAEYVGHLRATEK 404
>pir||T46284 hypothetical protein DKFZp566E044.1 - human
gi|6808055|emb|CAB70878.1| hypothetical protein [Homo
sapiens]
Length = 1063
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +3
Query: 306 ARVGLVFEDSMLKH--LGPSSHPECPERAVELMAALKRHGLDKRCVPLQPRQATDEELLR 479
+R GLV++ +M+ H L S HPE P+R + +M L+ GL RC+ L PR AT+ ELL
Sbjct: 327 SRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLT 386
Query: 480 CHQPEHLRKVAAVSE 524
CH E++ + A +
Sbjct: 387 CHSAEYVGHLRATEK 401
>gb|AAH13737.1| HDAC6 protein [Homo sapiens]
Length = 1063
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +3
Query: 306 ARVGLVFEDSMLKH--LGPSSHPECPERAVELMAALKRHGLDKRCVPLQPRQATDEELLR 479
+R GLV++ +M+ H L S HPE P+R + +M L+ GL RC+ L PR AT+ ELL
Sbjct: 327 SRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLT 386
Query: 480 CHQPEHLRKVAAVSE 524
CH E++ + A +
Sbjct: 387 CHSAEYVGHLRATEK 401
>dbj|BAC86838.1| unnamed protein product [Homo sapiens]
Length = 632
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +3
Query: 306 ARVGLVFEDSMLKH--LGPSSHPECPERAVELMAALKRHGLDKRCVPLQPRQATDEELLR 479
+R GLV++ +M+ H L S HPE P+R + +M L+ GL RC+ L PR AT+ ELL
Sbjct: 127 SRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLT 186
Query: 480 CHQPEHLRKVAAVSE 524
CH E++ + A +
Sbjct: 187 CHSAEYVGHLRATEK 201
>sp|Q9UBN7|HDA6_HUMAN Histone deacetylase 6 (HD6) gi|3776071|emb|CAA09893.1| histone
deacetylase-like protein [Homo sapiens]
gi|4754911|gb|AAD29048.1|AF132609_1 histone deacetylase
6 [Homo sapiens]
Length = 1215
Score = 64.3 bits (155), Expect = 1e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +3
Query: 306 ARVGLVFEDSMLKH--LGPSSHPECPERAVELMAALKRHGLDKRCVPLQPRQATDEELLR 479
+R GLV++ +M+ H L S HPE P+R + +M L+ GL RC+ L PR AT+ ELL
Sbjct: 479 SRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLT 538
Query: 480 CHQPEHLRKVAAVSE 524
CH E++ + A +
Sbjct: 539 CHSAEYVGHLRATEK 553
Score = 38.9 bits (89), Expect = 0.049
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 306 ARVGLVFEDSMLKH--LGPSSHPECPERAVELMAALKRHGLDKRCVPLQPRQATDEELLR 479
A GLV ++ + + L S PE PER + L + GL RCV Q R A EEL+
Sbjct: 84 AGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELML 143
Query: 480 CHQPEHL 500
H E++
Sbjct: 144 VHSLEYI 150
