KCC003166A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003166A_C01 KCC003166A_c01
cgtctaactagctgtgattATCATAATTGTGTTTGTACATAACACTGTTCAAGTCCGCAC
AAGTCCACCGCCAGATCTTTCGCGCGAATCTTCCGCCTTCAACATTTCGCTTTGGCGTTC
TTGACAACTTGACGCTTGAAAAATGATGCCAATGATGGGGATGCAGCCCCAGATCATTCT
CTTGAAAGAGGGAACGGACACATCTCAGGGCAAGGCGCAGCTTATTAGCAACATCAACGC
CTGTATGGCCGTGGTGGACACCGTGCGGACCACCCTGGGCCCTCGCGGCATGGATAAGCT
CATTCACGACGCCAGGGGCGTGACCATCTCGAACGACGGCGCGACCATCATGAAGCTCCT
TGACATCGTGCACCCCGCGGCAAAGAGCCTGGTGGACGTGTCTCTGGCTCAGGATGCCGA
GGTTGGCGACGGCACCACCAGTGTGGTGGTGCTGGCTGGCGAGTTCCTGAAGGAGGCCAA
GCCGTTCATTGAGGAGGGCGTGCACCCACGGAGCCTGATGAAGAGCTTCCGCCAGGCCTC
TGTGCTGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003166A_C01 KCC003166A_c01
         (550 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_187789.1| chaperonin, putative [Arabidopsis thaliana] gi|...   208  4e-53
ref|XP_312159.1| ENSANGP00000022115 [Anopheles gambiae] gi|21295...   204  8e-52
ref|XP_312160.1| ENSANGP00000024201 [Anopheles gambiae] gi|30177...   202  3e-51
ref|NP_649835.1| CG8351-PA [Drosophila melanogaster] gi|21483476...   201  5e-51
sp|P54409|TCPH_TETPY T-COMPLEX PROTEIN 1, ETA SUBUNIT (TCP-1-ETA...   186  2e-46

>ref|NP_187789.1| chaperonin, putative [Arabidopsis thaliana]
           gi|6671939|gb|AAF23199.1|AC016795_12 putative T-complex
           protein 1, ETA subunit [Arabidopsis thaliana]
           gi|17979243|gb|AAL49938.1| AT3g11830/F26K24_12
           [Arabidopsis thaliana] gi|20857172|gb|AAM26704.1|
           AT3g11830/F26K24_12 [Arabidopsis thaliana]
          Length = 557

 Score =  208 bits (529), Expect = 4e-53
 Identities = 106/131 (80%), Positives = 120/131 (90%), Gaps = 1/131 (0%)
 Frame = +2

Query: 161 MQPQIILLKEGTDTSQGKAQLISNINACMAVVDTVRTTLGPRGMDKLIHDARG-VTISND 337
           MQPQIILLKEGTDTSQGKAQL+SNINAC AV D VRTTLGPRGMDKLIHD +G VTISND
Sbjct: 5   MQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISND 64

Query: 338 GATIMKLLDIVHPAAKSLVDVSLAQDAEVGDGTTSVVVLAGEFLKEAKPFIEEGVHPRSL 517
           GATIMKLLDIVHPAAK LVD++ +QD+EVGDGTT+VV+LA EFLKEAKPFIE+GVH ++L
Sbjct: 65  GATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNL 124

Query: 518 MKSFRQASVLA 550
           ++S+R AS LA
Sbjct: 125 IRSYRTASTLA 135

>ref|XP_312159.1| ENSANGP00000022115 [Anopheles gambiae] gi|21295699|gb|EAA07844.1|
           ENSANGP00000022115 [Anopheles gambiae str. PEST]
          Length = 555

 Score =  204 bits (518), Expect = 8e-52
 Identities = 101/127 (79%), Positives = 117/127 (91%), Gaps = 1/127 (0%)
 Frame = +2

Query: 161 MQPQIILLKEGTDTSQGKAQLISNINACMAVVDTVRTTLGPRGMDKLIHDARG-VTISND 337
           MQPQIILLKEGTDTSQGK QL+SNINAC ++VD VRTTLGPRGMDKLI D++G  TISND
Sbjct: 14  MQPQIILLKEGTDTSQGKPQLVSNINACQSIVDAVRTTLGPRGMDKLIVDSKGKATISND 73

Query: 338 GATIMKLLDIVHPAAKSLVDVSLAQDAEVGDGTTSVVVLAGEFLKEAKPFIEEGVHPRSL 517
           GATIMKLLDIVHPAAK+LVD++ +QDAEVGDGTTSVV+LAGEFLK+ KPF+EEGVHPR +
Sbjct: 74  GATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFVEEGVHPRII 133

Query: 518 MKSFRQA 538
           +K+ R+A
Sbjct: 134 IKAVRKA 140

>ref|XP_312160.1| ENSANGP00000024201 [Anopheles gambiae] gi|30177397|gb|EAA44880.1|
           ENSANGP00000024201 [Anopheles gambiae str. PEST]
          Length = 542

 Score =  202 bits (513), Expect = 3e-51
 Identities = 100/126 (79%), Positives = 116/126 (91%), Gaps = 1/126 (0%)
 Frame = +2

Query: 164 QPQIILLKEGTDTSQGKAQLISNINACMAVVDTVRTTLGPRGMDKLIHDARG-VTISNDG 340
           QPQIILLKEGTDTSQGK QL+SNINAC ++VD VRTTLGPRGMDKLI D++G  TISNDG
Sbjct: 2   QPQIILLKEGTDTSQGKPQLVSNINACQSIVDAVRTTLGPRGMDKLIVDSKGKATISNDG 61

Query: 341 ATIMKLLDIVHPAAKSLVDVSLAQDAEVGDGTTSVVVLAGEFLKEAKPFIEEGVHPRSLM 520
           ATIMKLLDIVHPAAK+LVD++ +QDAEVGDGTTSVV+LAGEFLK+ KPF+EEGVHPR ++
Sbjct: 62  ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFVEEGVHPRIII 121

Query: 521 KSFRQA 538
           K+ R+A
Sbjct: 122 KAVRKA 127

>ref|NP_649835.1| CG8351-PA [Drosophila melanogaster] gi|21483476|gb|AAM52713.1|
           LD47396p [Drosophila melanogaster]
           gi|23170738|gb|AAF54292.2| CG8351-PA [Drosophila
           melanogaster]
          Length = 544

 Score =  201 bits (511), Expect = 5e-51
 Identities = 98/127 (77%), Positives = 116/127 (91%), Gaps = 1/127 (0%)
 Frame = +2

Query: 161 MQPQIILLKEGTDTSQGKAQLISNINACMAVVDTVRTTLGPRGMDKLIHDARG-VTISND 337
           MQPQI+LLKEGTD+SQGK QL+SNINAC ++VD VRTTLGPRGMDKLI DA G  TISND
Sbjct: 1   MQPQIVLLKEGTDSSQGKPQLVSNINACQSIVDAVRTTLGPRGMDKLIVDAHGKATISND 60

Query: 338 GATIMKLLDIVHPAAKSLVDVSLAQDAEVGDGTTSVVVLAGEFLKEAKPFIEEGVHPRSL 517
           GATIMKLL+I+HPAAK+LVD++ +QDAEVGDGTTSVV+LAGEFLK+ KPF+EEGVHPR +
Sbjct: 61  GATIMKLLEIIHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQVKPFVEEGVHPRVI 120

Query: 518 MKSFRQA 538
           +K+ R+A
Sbjct: 121 IKAIRKA 127

>sp|P54409|TCPH_TETPY T-COMPLEX PROTEIN 1, ETA SUBUNIT (TCP-1-ETA) (CCT-ETA)
           gi|7441905|pir||S71337 t-complex protein 1 theta chain -
           Tetrahymena pyriformis gi|1262453|gb|AAC47006.1| CCTeta
           gi|1588684|prf||2209286A chaperonin CCT-eta
          Length = 558

 Score =  186 bits (471), Expect = 2e-46
 Identities = 92/130 (70%), Positives = 111/130 (84%)
 Frame = +2

Query: 161 MQPQIILLKEGTDTSQGKAQLISNINACMAVVDTVRTTLGPRGMDKLIHDARGVTISNDG 340
           MQP I+LLK+GTDTSQGKAQ+ISNINA  ++V+ V+TTLGPRGMDKLI   RG TISNDG
Sbjct: 2   MQPTILLLKDGTDTSQGKAQIISNINAVQSIVEIVKTTLGPRGMDKLIEGNRGATISNDG 61

Query: 341 ATIMKLLDIVHPAAKSLVDVSLAQDAEVGDGTTSVVVLAGEFLKEAKPFIEEGVHPRSLM 520
           ATI+ LLDIVHPAAK+LVD++ AQD EVGDGTTSV +LAGE LKE+K FIEEG+HP+ + 
Sbjct: 62  ATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVT 121

Query: 521 KSFRQASVLA 550
           K +++A  LA
Sbjct: 122 KGYKEALKLA 131



EST assemble image


clone accession position
1 LCL049h05_r AV628978 1 309
2 LCL028e10_r AV627561 20 551
3 MXL099g01_r BP098822 30 370
4 LCL092b12_r AV631335 60 348
5 LCL045b12_r AV628656 66 522
6 MXL009h01_r BP093540 174 421




Chlamydomonas reinhardtii
Kazusa DNA Research Institute