KCC003156A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003156A_C01 KCC003156A_c01
gctgtcagtccaGTCAGTGAGGGACTTCTAGTTTTTCTTTAGAAGCAGACGCGACTGGCC
GATCGCGCCGTTTTCACCGAAACGCAACAGATCGACAGGCTGGGCTCTCGCACTTATACC
AACAAGTAGACAGCAATCGTTAAGACACGCGAGGCAGCTATCAGCGCGCTCCGCGCGGAG
GAGCCCGACTACATCCTTCGCGCGCAAGCAGCTGCGGAAGGCGACCTACCAGCAGCGTGC
CCAGCTCCGGGCGCAGGCGCTGGTCCAGACCAGGGTCCTGGGGGCTCCGGCTCGGGTTCG
GACTCTGGCTCAGGCTCGGGCACAGGTGACGGTGAGCGGACTCCGGGGCGCCGGGGTGCA
GCGGGCCCGACGCAAGGCCCGACCAAGGCCCGACGCAGCCGGCAGACTGAGCGCTCGCCG
CACCGGCGCAGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGC
GACAGCAGCAGCTGCAACAGCGACAGCGACAGCGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003156A_C01 KCC003156A_c01
         (516 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens]        73  2e-12
emb|CAE17915.1| Hypothetical protein R13H4.8 [Caenorhabditis ele...    63  3e-09
ref|NP_494943.1| putative secreted or extracellular protein prec...    63  3e-09
ref|NP_494944.1| putative protein (2F393) [Caenorhabditis elegan...    60  1e-08
ref|NP_495859.1| putative secreted or extracellular protein prec...    60  1e-08

>gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens]
          Length = 46

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 22/29 (75%), Positives = 23/29 (78%)
 Frame = -3

Query: 514 RCRCRCCSCCCRCCCCCRCCCCCCCCWGC 428
           R RC CC CCC CCCCC CCCCCCCC+ C
Sbjct: 8   RSRCCCCCCCCCCCCCCCCCCCCCCCFCC 36

 Score = 64.7 bits (156), Expect = 7e-10
 Identities = 21/29 (72%), Positives = 21/29 (72%)
 Frame = -3

Query: 514 RCRCRCCSCCCRCCCCCRCCCCCCCCWGC 428
           RC C CC CCC CCCCC CCCCCCC   C
Sbjct: 10  RCCCCCCCCCCCCCCCC-CCCCCCCFCCC 37

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -3

Query: 505 CRCC---SCCCRCCCCCRCCCCCCCCWGC 428
           C  C   S CC CCCCC CCCCCCCC  C
Sbjct: 2   CELCPDRSRCCCCCCCCCCCCCCCCCCCC 30

 Score = 35.0 bits (79), Expect = 0.57
 Identities = 10/17 (58%), Positives = 11/17 (63%)
 Frame = -3

Query: 511 CRCRCCSCCCRCCCCCR 461
           C C CC CCC  CCC +
Sbjct: 23  CCCCCCCCCCCFCCCLK 39

>emb|CAE17915.1| Hypothetical protein R13H4.8 [Caenorhabditis elegans]
          Length = 212

 Score = 62.8 bits (151), Expect = 3e-09
 Identities = 25/48 (52%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = -3

Query: 511 CRCRCCSCCCRCCCCCRCCCC--CC-----CCWGCAGAASAQSAGCVG 389
           CR RCC CC RCC CCR CCC  CC     CC GC         GC G
Sbjct: 89  CRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCGCCGCGG 136

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
 Frame = -3

Query: 505 CRCCSCCCRCCCC-CRCCCCC---------CCCWGCAGAASAQSAGC 395
           C CC C C CCCC  RCCCCC         CCC  C         GC
Sbjct: 77  CGCCGCGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 123

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 25/54 (46%), Positives = 26/54 (47%), Gaps = 8/54 (14%)
 Frame = -3

Query: 514 RCRC---RCCSCCCRCCC-----CCRCCCCCCCCWGCAGAASAQSAGCVGPWSG 377
           RC C   RCC+CC  CCC     CCR CCC C C GC         GC G   G
Sbjct: 92  RCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCGC-GC-------GCGCCGCGGG 137

>ref|NP_494943.1| putative secreted or extracellular protein precursor (2F392)
           [Caenorhabditis elegans]
           gi|14573761|gb|AAK68161.1|U55854_9 Hypothetical protein
           C04G6.7 [Caenorhabditis elegans]
          Length = 197

 Score = 62.8 bits (151), Expect = 3e-09
 Identities = 23/45 (51%), Positives = 23/45 (51%)
 Frame = -3

Query: 511 CRCRCCSCCCRCCCCCRCCCCCCCCWGCAGAASAQSAGCVGPWSG 377
           CR RCC CC RCC CCR CCC  CC  C         GC G   G
Sbjct: 89  CRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCGCGCCGCGGG 133

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 22/59 (37%)
 Frame = -3

Query: 505 CRCCSC---CCRC--------CCCC--RCCCCC---------CCCWGCAGAASAQSAGC 395
           C CC C   CC C        CCCC  RCCCCC         CCC  C         GC
Sbjct: 65  CGCCGCGCGCCGCGGGGGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 123

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = -3

Query: 511 CRCRCCSCC-----CRCCCCCRCCCCCC--CCWGCAGAASAQSAGCVGP 386
           C C CC C      C CCCC   CCCCC  CC  C      +   C  P
Sbjct: 70  CGCGCCGCGGGGGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRP 118

 Score = 31.2 bits (69), Expect = 8.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 466 CRCCCCCCCCWGCAGAASAQSAGCVGP 386
           C CC C C C GC G        C  P
Sbjct: 65  CGCCGCGCGCCGCGGGGGGCGCCCCRP 91

>ref|NP_494944.1| putative protein (2F393) [Caenorhabditis elegans]
           gi|14573757|gb|AAK68158.1|U55854_2 Hypothetical protein
           C04G6.10 [Caenorhabditis elegans]
          Length = 166

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 21/39 (53%), Positives = 21/39 (53%)
 Frame = -3

Query: 511 CRCRCCSCCCRCCCCCRCCCCCCCCWGCAGAASAQSAGC 395
           CR RCC CC RCC CCR CCC  CC  C         GC
Sbjct: 88  CRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCGCGC 126

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 505 CRCCSCCCRCCCCCR-CCCCC--CCCWGCAGAASAQSAGC 395
           C CC C  RCCCCCR CC CC  CCC  C         GC
Sbjct: 83  CGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 122

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 22/34 (64%), Positives = 23/34 (66%), Gaps = 3/34 (8%)
 Frame = -3

Query: 514 RCRCRCC-SCCC-RCCCCCR-CCCCCCCCWGCAG 422
           RC C CC +CCC RCC CCR CCC C C  GC G
Sbjct: 98  RC-CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCG 130

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = -3

Query: 511 CRCRCCSCC-----CRCCCCCRCCCCCC--CCWGCAGAASAQSAGCVGP 386
           C C CC C      C CCCC   CCCCC  CC  C      +   C  P
Sbjct: 69  CGCGCCGCGGGGGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRP 117

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 511 CRCRCCSCCCRCC--CCCRCCCCCCCCWGCAG 422
           CR  CC+ CC CC  CCC C C C CC GC G
Sbjct: 103 CRTCCCTRCCTCCRPCCCGCGCGCGCC-GCGG 133

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 514 RCRCRCCS-CCCRCCCCCRCCCC 449
           RC C CC  CCC C C C CC C
Sbjct: 110 RC-CTCCRPCCCGCGCGCGCCGC 131

 Score = 31.2 bits (69), Expect = 8.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 466 CRCCCCCCCCWGCAGAASAQSAGCVGP 386
           C CC C C C GC G        C  P
Sbjct: 64  CGCCGCGCGCCGCGGGGGGCGCCCCRP 90

>ref|NP_495859.1| putative secreted or extracellular protein precursor (2J24)
           [Caenorhabditis elegans] gi|7506829|pir||T24272
           hypothetical protein T01B7.8 - Caenorhabditis elegans
           gi|3879236|emb|CAA91301.1| Hypothetical protein T01B7.8
           [Caenorhabditis elegans]
          Length = 164

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 21/39 (53%), Positives = 21/39 (53%)
 Frame = -3

Query: 511 CRCRCCSCCCRCCCCCRCCCCCCCCWGCAGAASAQSAGC 395
           CR RCC CC RCC CCR CCC  CC  C         GC
Sbjct: 87  CRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCGCGC 125

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 505 CRCCSCCCRCCCCCR-CCCCC--CCCWGCAGAASAQSAGC 395
           C CC C  RCCCCCR CC CC  CCC  C         GC
Sbjct: 82  CGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 121

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 22/34 (64%), Positives = 23/34 (66%), Gaps = 3/34 (8%)
 Frame = -3

Query: 514 RCRCRCC-SCCC-RCCCCCR-CCCCCCCCWGCAG 422
           RC C CC +CCC RCC CCR CCC C C  GC G
Sbjct: 97  RC-CTCCRTCCCTRCCTCCRPCCCGCGCGCGCCG 129

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = -3

Query: 511 CRCRCCSCC-----CRCCCCCRCCCCCC--CCWGCAGAASAQSAGCVGP 386
           C C CC C      C CCCC   CCCCC  CC  C      +   C  P
Sbjct: 68  CGCGCCGCGGGGGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRP 116

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 511 CRCRCCSCCCRCC--CCCRCCCCCCCCWGCAG 422
           CR  CC+ CC CC  CCC C C C CC GC G
Sbjct: 102 CRTCCCTRCCTCCRPCCCGCGCGCGCC-GCGG 132

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 514 RCRCRCCS-CCCRCCCCCRCCCC 449
           RC C CC  CCC C C C CC C
Sbjct: 109 RC-CTCCRPCCCGCGCGCGCCGC 130

 Score = 31.2 bits (69), Expect = 8.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 466 CRCCCCCCCCWGCAGAASAQSAGCVGP 386
           C CC C C C GC G        C  P
Sbjct: 63  CGCCGCGCGCCGCGGGGGGCGCCCCRP 89



EST assemble image


clone accession position
1 LCL026e12_r AV627429 1 516
2 LCL054g05_r AV629224 13 461
3 LCL075f05_r AV630222 143 435




Chlamydomonas reinhardtii
Kazusa DNA Research Institute