KCC003150A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003150A_C01 KCC003150A_c01
aggcgaagcagaagccagtaagttgcattcaattctctgcggtatgatgtttAGCATGAA
GTAATCCTTAAAGCAAACGCTGTCGCCTGGGCTCAAACGTCTGAAACCGGTCGCTTCATT
CGCGGAGGTCATAAGTAGCCCTTGGTGATTGGACTTTAAGTAACCATGACATCGTTGGGA
CTCCGGCGAGGGCATGCAAGAGCTTTCCAATTCGCGCCAAATGGCGTCCGCAGCGACTTC
CGACTATTGGAGGTCAATGATGAGCTGCTTGCGGAGATATGCAAAGACGGCGTTGTCATC
AAGGGAGGTGAGGAGGAGGAGGCGGTGCTGTGCACGTCCAAGAAGACCTTCGCTATGAAA
CTGGTTGAGACGACCAACCTTCAACTTCTGGTGCGCCCCACGCAGCAAGACGAGCAGGAG
AAGCCCTCGGCCACTCCTCCGGGGCGGCCGCGCGGGATGAGTCAGGGCCTCCAGACTCAG
TGGAATAACTTCCGCACCGCGGAAGAGAGCGCGCCTGTGGTCGTCTCCGCCACCAGTACA
TCGCACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003150A_C01 KCC003150A_c01
         (547 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_181986.1| zinc finger (C3HC4-type RING finger) protein fa...    50  2e-05
ref|XP_311420.1| ENSANGP00000000566 [Anopheles gambiae] gi|21294...    49  3e-05
ref|XP_216934.2| similar to hypothetical protein MGC5528 [Rattus...    48  7e-05
gb|AAH01531.1| Hypothetical protein MGC5528 [Homo sapiens] gi|16...    46  3e-04
ref|NP_076999.1| hypothetical protein MGC5528 [Homo sapiens] gi|...    46  3e-04

>ref|NP_181986.1| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis
           thaliana] gi|7485548|pir||T01585 probable RING zinc
           finger protein homolog At2g44580 [imported] -
           Arabidopsis thaliana gi|3341678|gb|AAC27460.1| putative
           RING zinc finger protein [Arabidopsis thaliana]
          Length = 624

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
 Frame = +1

Query: 175 LGLRRGHARAFQFAPN-GVRSDFRLLEVNDELLAEICKD-------GVVIKGGEEEEAVL 330
           + L+ G++    + P  G   D  LLE +D+L+++I          GV ++G  +E+AVL
Sbjct: 11  INLKSGYSLPISYHPCFGPHEDLLLLEADDKLVSDIFHQRYDFEAFGVTLRGLPDEDAVL 70

Query: 331 CTSKKTFAMKLVETTNLQLLVRPT 402
           CT  KT+A+K V  +N   L+ P+
Sbjct: 71  CTKSKTYAIKFVGNSNSMFLIPPS 94

>ref|XP_311420.1| ENSANGP00000000566 [Anopheles gambiae] gi|21294887|gb|EAA07032.1|
           ENSANGP00000000566 [Anopheles gambiae str. PEST]
          Length = 384

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = +1

Query: 235 DFRLLEVNDELLAEICKDG-VVIKGGEEEEAVLCTSKKTFAMKLVETTNLQLLVRPTQQD 411
           + +LLEV++ +L EI K   +  KG   E+ VLCT  +T+ MK  E +N  LLV+  +Q+
Sbjct: 40  NIKLLEVDEHILEEIKKGSEICFKGALNEKVVLCTESRTYEMKEAEISNSLLLVKEEEQE 99

Query: 412 EQEK 423
           + +K
Sbjct: 100 DPDK 103

>ref|XP_216934.2| similar to hypothetical protein MGC5528 [Rattus norvegicus]
          Length = 399

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +1

Query: 193 HARAFQFAPNGVRS-DFRLLEVNDELLAEI-CKDGVVIKGGEEEEAVLCTSKKTFAMKLV 366
           H  +F    +G  + DF LLE+   L  ++   D  VI+G ++E+AVLC+  KT+ +K+ 
Sbjct: 33  HCLSFGSGTSGAATGDFCLLELEPALCQQLEAGDSFVIRGDKDEQAVLCSKDKTYDLKIA 92

Query: 367 ETTNLQLLVRPTQQDEQEKPSAT 435
           +T+N+ L +   +  +Q K   T
Sbjct: 93  DTSNMLLFIPGCKTPDQLKGEET 115

>gb|AAH01531.1| Hypothetical protein MGC5528 [Homo sapiens]
           gi|16549155|dbj|BAB70767.1| unnamed protein product
           [Homo sapiens]
          Length = 393

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 2/72 (2%)
 Frame = +1

Query: 214 APNGVRSDFRLLEVNDELLAEICKDG--VVIKGGEEEEAVLCTSKKTFAMKLVETTNLQL 387
           A      DF LLE+   L  ++ +DG  +VI+G ++E+AVLC+  KT+ +K+ +T+N+ L
Sbjct: 35  ASGAAAGDFCLLELEPTLCQQL-EDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLL 93

Query: 388 LVRPTQQDEQEK 423
            +   +  +Q K
Sbjct: 94  FIPGCKTPDQLK 105

>ref|NP_076999.1| hypothetical protein MGC5528 [Homo sapiens]
           gi|12654937|gb|AAH01316.1| Hypothetical protein MGC5528
           [Homo sapiens] gi|37182850|gb|AAQ89225.1| KRTR9337 [Homo
           sapiens]
          Length = 393

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 2/72 (2%)
 Frame = +1

Query: 214 APNGVRSDFRLLEVNDELLAEICKDG--VVIKGGEEEEAVLCTSKKTFAMKLVETTNLQL 387
           A      DF LLE+   L  ++ +DG  +VI+G ++E+AVLC+  KT+ +K+ +T+N+ L
Sbjct: 35  ASGAAAGDFCLLELEPTLCQQL-EDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLL 93

Query: 388 LVRPTQQDEQEK 423
            +   +  +Q K
Sbjct: 94  FIPGCKTPDQLK 105



EST assemble image


clone accession position
1 MXL045f12_r BP095679 1 447
2 LCL025a04_r AV627323 53 547




Chlamydomonas reinhardtii
Kazusa DNA Research Institute