Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003146A_C01 KCC003146A_c01
(623 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92503.1| unnamed protein product [Oryza sativa (japonica ... 107 1e-22
ref|NP_192252.1| pre-mRNA splicing factor -related [Arabidopsis ... 104 1e-21
gb|AAL58273.1|AC068923_15 putative pre-mRNA splicing factor [Ory... 103 2e-21
gb|AAM93674.1| putative splicing factor, 3'-partial [Oryza sati... 103 2e-21
ref|NP_195571.2| glycosyl hydrolase family 35 (beta-galactosidas... 90 2e-17
>dbj|BAA92503.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 107 bits (268), Expect = 1e-22
Identities = 62/120 (51%), Positives = 72/120 (59%), Gaps = 4/120 (3%)
Frame = +1
Query: 274 AMTREDTRPTRPMPKAPTTKVDFNSLKAPAGYVPGLGRGAAGFTTRSDIGPARAGGIDAL 453
A T P P P A + DF + K P YV LGRGAAGFTTRSDIGPA G
Sbjct: 6 ATTPSAPPPPPPPPAACAARYDFLNSKPPPNYVARLGRGAAGFTTRSDIGPAMGRGRGKP 65
Query: 454 KG--APGSKAGEGEDPNLDEN-KFDEFMGNDAGVFAATG-EYDEDDKEADAVWEGVDNFM 621
G G G+ E+ DEN KFDEF GNDAG+F+ G + D+DD+EADAVWEG+D M
Sbjct: 66 PGDDGDGDGGGDEEEKGYDENQKFDEFEGNDAGLFSNAGHDDDDDDREADAVWEGIDRRM 125
>ref|NP_192252.1| pre-mRNA splicing factor -related [Arabidopsis thaliana]
gi|25407191|pir||E85043 probable pre-mRNA splicing
factor [imported] - Arabidopsis thaliana
gi|4206197|gb|AAD11585.1|AAD11585 putative pre-mRNA
splicing factor [Arabidopsis thaliana]
gi|7270213|emb|CAB77828.1| putative pre-mRNA splicing
factor [Arabidopsis thaliana] gi|16604551|gb|AAL24077.1|
putative pre-mRNA splicing factor [Arabidopsis thaliana]
gi|23296408|gb|AAN13111.1| putative pre-mRNA splicing
factor [Arabidopsis thaliana]
Length = 1029
Score = 104 bits (259), Expect = 1e-21
Identities = 61/120 (50%), Positives = 70/120 (57%), Gaps = 20/120 (16%)
Frame = +1
Query: 322 PTTKVDFNSLKAPAGYVPGLGRGAAGFTTRSDIGPARAG------GIDALKGAPGSKAG- 480
P ++DF + K P+ YV GLGRGA GFTTRSDIGPARA A APG G
Sbjct: 91 PKPRLDFLNSKPPSNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSALATAAAPGVGRGA 150
Query: 481 ------------EGEDPNLDENK-FDEFMGNDAGVFAATGEYDEDDKEADAVWEGVDNFM 621
E E+ DEN+ FDEF GND G+F A EYDEDDKEADA+WE +D M
Sbjct: 151 GKPSEAEAEDDEEAEEKRYDENQTFDEFEGNDVGLF-ANAEYDEDDKEADAIWESIDQRM 209
>gb|AAL58273.1|AC068923_15 putative pre-mRNA splicing factor [Oryza sativa (japonica
cultivar-group)] gi|31432880|gb|AAP54456.1| putative
pre-mRNA splicing factor [Oryza sativa (japonica
cultivar-group)]
Length = 1039
Score = 103 bits (258), Expect = 2e-21
Identities = 64/143 (44%), Positives = 76/143 (52%), Gaps = 28/143 (19%)
Frame = +1
Query: 277 MTREDTRPTRPMPKAPTT--------KVDFNSLKAPAGYVPGLGRGAAGFTTRSDIGPAR 432
MT T P P P P + + DF + K P YV GLGRGA GFTTRSDIGPAR
Sbjct: 81 MTGPTTTPAAPPPPPPPSAQPPARPARYDFLNSKPPPNYVAGLGRGATGFTTRSDIGPAR 140
Query: 433 AG--------------GIDALKGAP-----GSKAGEGEDPNLDEN-KFDEFMGNDAGVFA 552
A + +G P G G E+ DEN KFDEF GNDAG+F
Sbjct: 141 AAPDLPDRSAAAAAAPAVGRGRGKPPGDDDGDDDGGDEEKGYDENQKFDEFEGNDAGLF- 199
Query: 553 ATGEYDEDDKEADAVWEGVDNFM 621
+ +YD+DD+EADAVWE +D M
Sbjct: 200 SNADYDDDDREADAVWESIDQRM 222
>gb|AAM93674.1| putative splicing factor, 3'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 416
Score = 103 bits (258), Expect = 2e-21
Identities = 64/143 (44%), Positives = 76/143 (52%), Gaps = 28/143 (19%)
Frame = +1
Query: 277 MTREDTRPTRPMPKAPTT--------KVDFNSLKAPAGYVPGLGRGAAGFTTRSDIGPAR 432
MT T P P P P + + DF + K P YV GLGRGA GFTTRSDIGPAR
Sbjct: 81 MTGPTTTPAAPPPPPPPSAQPPARPARYDFLNSKPPPNYVAGLGRGATGFTTRSDIGPAR 140
Query: 433 AG--------------GIDALKGAP-----GSKAGEGEDPNLDEN-KFDEFMGNDAGVFA 552
A + +G P G G E+ DEN KFDEF GNDAG+F
Sbjct: 141 AAPDLPDRSAAAAAAPAVGRGRGKPPGDDDGDDDGGDEEKGYDENQKFDEFEGNDAGLF- 199
Query: 553 ATGEYDEDDKEADAVWEGVDNFM 621
+ +YD+DD+EADAVWE +D M
Sbjct: 200 SNADYDDDDREADAVWESIDQRM 222
>ref|NP_195571.2| glycosyl hydrolase family 35 (beta-galactosidase) [Arabidopsis
thaliana]
Length = 988
Score = 90.1 bits (222), Expect = 2e-17
Identities = 50/93 (53%), Positives = 59/93 (62%), Gaps = 1/93 (1%)
Frame = +1
Query: 346 SLKAPAGYVPGLGRGAAGFTTRSDIGPARAGGIDALKGAPGSKAGEGEDPNLDEN-KFDE 522
+L P+ YV GLGRGAAGFTTRSDIGPARA G D N D N KFD+
Sbjct: 854 NLMPPSNYVAGLGRGAAGFTTRSDIGPARANG----------------DGNADVNHKFDD 897
Query: 523 FMGNDAGVFAATGEYDEDDKEADAVWEGVDNFM 621
F G+DAG+F A E D+ DKEADA+W+ +D M
Sbjct: 898 FEGHDAGLF-ANAESDDQDKEADAIWDAIDRRM 929
