KCC003145A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003145A_C01 KCC003145A_c01
cacaaACAACTTGCGCACGCTTTACAACCACTTGCTGCACTTGGGCGCGACGGCGCACAA
CTTCCATCGCCAAACGTTTCATCGAATTTCCTAGATCTTTTGATTCAATCTGACAATCCT
CTACCTAGGAACGCGCTGCTACGTTGTGGCGCCTTGCCATCCGAGTTTGGGCCCGTAATT
CTTGACCCTGACTCACGGCGGCTTGGCGGGGCCGACCACCTTTTGGTGACATTTAACCAT
ACAGCCTCTGTAGACGTTTTCGGAGGGTGGGGAGCGCCGGAACGTGCAGGCCCAGTTGCA
TATTGTAGACATCACTAGCTTTTCATAGTCAAGTCTCTCGGCTTGCACCAATCGCTCATA
GTCGCTTCGATTGACGAGAGTCCACTCACACACAGCCGAACGTCGGGGTGCAGGCTTCCA
CAGAGCCCGCGACTATGTCCGGCGACAGCAGCGCCGGCGAGCGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003145A_C01 KCC003145A_c01
         (466 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00139713.1| COG0500: SAM-dependent methyltransferases [Ps...    34  0.71
gb|AAH56788.1| Unknown (protein for MGC:63605) [Danio rerio]           34  0.71
ref|XP_168343.1| hypothetical protein XP_168343 [Homo sapiens]         33  1.2
emb|CAD31548.1| CONSERVED HYPOTHETICAL PROTEIN [Mesorhizobium loti]    33  2.1
ref|XP_138615.2| similar to HSPC039 protein [Homo sapiens] [Mus ...    32  2.7

>ref|ZP_00139713.1| COG0500: SAM-dependent methyltransferases [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 389

 Score = 34.3 bits (77), Expect = 0.71
 Identities = 26/61 (42%), Positives = 31/61 (50%)
 Frame = -3

Query: 209 PPSRRESGSRITGPNSDGKAPQRSSAFLGRGLSD*IKRSRKFDETFGDGSCAPSRPSAAS 30
           P  RR +     G NS G A +RS A  GRGLS    RSR +    GD  CAP+  +A  
Sbjct: 11  PADRRRNRLARGGGNSRG-AGRRSRAAGGRGLSRSAGRSR-YPRPAGDSRCAPALAAAPP 68

Query: 29  G 27
           G
Sbjct: 69  G 69

>gb|AAH56788.1| Unknown (protein for MGC:63605) [Danio rerio]
          Length = 377

 Score = 34.3 bits (77), Expect = 0.71
 Identities = 15/36 (41%), Positives = 20/36 (54%)
 Frame = +1

Query: 184 DPDSRRLGGADHLLVTFNHTASVDVFGGWGAPERAG 291
           DP+S RL G ++ +V  NH   +D   GW   ER G
Sbjct: 78  DPESFRLYGKENAIVVLNHNFEIDFMTGWTFCERFG 113

>ref|XP_168343.1| hypothetical protein XP_168343 [Homo sapiens]
          Length = 305

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 19/66 (28%), Positives = 30/66 (44%)
 Frame = -3

Query: 407 PDVRLCVSGLSSIEATMSDWCKPRDLTMKS**CLQYATGPARSGAPHPPKTSTEAVWLNV 228
           P +  C S + S+  T+  +C    L        ++  GP    APHPP+ +T    L  
Sbjct: 99  PSLTTCPSAVFSLPVTVWRFCWLTRLP-------RHPWGPPEGAAPHPPRLTTSWALLCS 151

Query: 227 TKRWSA 210
           +K W+A
Sbjct: 152 SKAWAA 157

>emb|CAD31548.1| CONSERVED HYPOTHETICAL PROTEIN [Mesorhizobium loti]
          Length = 694

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +1

Query: 52  GAQLPSPNVSSNFLD-LLIQSDNPLPRNALLRCGALPSEFGPVILDPDSRRLGGADHLL- 225
           G  +P+   S + LD LL  + +P    A L     P    PV+ DP         +++ 
Sbjct: 307 GGLVPTTPASKHLLDELLANTTDPTDEVAKLATPRAPEALSPVLPDPSKIFANTKGNVMG 366

Query: 226 -VTFNHTASVDVFGGWGAPERAGPVA 300
            VT N +  V +F G G P    P A
Sbjct: 367 GVTMNFSGPVTIFVGSGVPASQLPQA 392

>ref|XP_138615.2| similar to HSPC039 protein [Homo sapiens] [Mus musculus]
          Length = 1292

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 20/46 (43%), Positives = 22/46 (47%)
 Frame = +3

Query: 261 RRVGSAGTCRPSCIL*TSLAFHSQVSRLAPIAHSRFD*RESTHTQP 398
           R  GS  T R  C L T    HSQ S L P A+S+FD       QP
Sbjct: 708 REFGSLETKRRPCHLQTPTPQHSQYSGLIPQAYSKFDLISKEQPQP 753



EST assemble image


clone accession position
1 LCL037f06_r AV628160 1 466
2 LCL024c09_r AV627279 6 145
3 MXL086d06_r BP098066 24 325




Chlamydomonas reinhardtii
Kazusa DNA Research Institute