KCC003141A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003141A_C01 KCC003141A_c01
cgcctagacccttgctttCGCACATCGGCGGAACTGTGCGAAAATCCATGCGGAAATGGT
GCGGAACTCACGAGTATTGATTGACTTCATTCCCGCTCTTCATGATTTCATACATATAAT
TACGCTTGTTCATAAGCCAGAACACAGCTCAGCCCTCGGTCAAAGGCACCTGGCTTGCAG
TTCCGTTTTTAACTTCCCCCCGCCAGCATCCAGCCATGCCGGGCAAGAAGGCTGTCCTCA
TCGGTTGTAACTATCCAGGGACCAACGCGGCCCTGCGTGGATGCATCAACGATGTGTGGG
GAATGAAGGAGATCCTCATCACCTACTATGGCTTTACGGACGCGGACCTGACCATTCTGA
TTGACACGGACAAGAGCTACCTGCAGCCCACTGGGAAGAACATCAAGGCCAAGATCACGG
AGATGGTGAGCGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003141A_C01 KCC003141A_c01
         (435 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD13216.1| latex-abundant protein [Hevea brasiliensis]             93  1e-18
ref|NP_178052.1| putative latex-abundant protein [Arabidopsis th...    89  2e-17
gb|AAP84710.2| metacaspase 7 [Arabidopsis thaliana]                    89  2e-17
ref|NP_178049.1| expressed protein [Arabidopsis thaliana] gi|748...    88  3e-17
gb|AAP84709.1| metacaspase 4 [Arabidopsis thaliana]                    88  3e-17

>gb|AAD13216.1| latex-abundant protein [Hevea brasiliensis]
          Length = 417

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 42/68 (61%), Positives = 54/68 (78%)
 Frame = +3

Query: 225 KKAVLIGCNYPGTNAALRGCINDVWGMKEILITYYGFTDADLTILIDTDKSYLQPTGKNI 404
           KKAVLIG NYPGT A L+GCINDV  M   L+  YGF++ D+T+LID D+SY+QPTGKNI
Sbjct: 3   KKAVLIGINYPGTKAELKGCINDVKRMYRCLVDRYGFSEEDITVLIDIDESYIQPTGKNI 62

Query: 405 KAKITEMV 428
           +  +T++V
Sbjct: 63  RRVLTDLV 70

>ref|NP_178052.1| putative latex-abundant protein [Arabidopsis thaliana]
           gi|7487912|pir||T01021 hypothetical protein YUP8H12R.4 -
           Arabidopsis thaliana gi|3152600|gb|AAC17081.1| Contains
           similarity to S. cerevisiae hypothetical protein
           YOR197w, gb|Z75105.  ESTs gb|H37409, gb|AA395290, and
           gb|T43907 come from this gene. [Arabidopsis thaliana]
           gi|19347869|gb|AAL85992.1| putative latex-abundant
           protein [Arabidopsis thaliana]
           gi|22136874|gb|AAM91781.1| putative latex-abundant
           protein [Arabidopsis thaliana]
          Length = 418

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 40/70 (57%), Positives = 54/70 (77%)
 Frame = +3

Query: 225 KKAVLIGCNYPGTNAALRGCINDVWGMKEILITYYGFTDADLTILIDTDKSYLQPTGKNI 404
           KKAVLIG NYPGT A LRGC+NDV  M + L+  YGF++ ++T+LIDTD+S  QPTGKNI
Sbjct: 3   KKAVLIGINYPGTKAELRGCVNDVRRMYKCLVERYGFSEENITVLIDTDESSTQPTGKNI 62

Query: 405 KAKITEMVSA 434
           +  + ++V +
Sbjct: 63  RRALADLVES 72

>gb|AAP84710.2| metacaspase 7 [Arabidopsis thaliana]
          Length = 418

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 40/70 (57%), Positives = 54/70 (77%)
 Frame = +3

Query: 225 KKAVLIGCNYPGTNAALRGCINDVWGMKEILITYYGFTDADLTILIDTDKSYLQPTGKNI 404
           KKAVLIG NYPGT A LRGC+NDV  M + L+  YGF++ ++T+LIDTD+S  QPTGKNI
Sbjct: 3   KKAVLIGINYPGTKAELRGCVNDVRRMYKCLVERYGFSEENITVLIDTDESSTQPTGKNI 62

Query: 405 KAKITEMVSA 434
           +  + ++V +
Sbjct: 63  RRALADLVES 72

>ref|NP_178049.1| expressed protein [Arabidopsis thaliana] gi|7487919|pir||T01024
           hypothetical protein YUP8H12R.7 - Arabidopsis thaliana
           gi|3152556|gb|AAC17037.1| Contains similarity to S.
           cerevisiae hypothetical protein YOR197w, gb|Z75105.
           [Arabidopsis thaliana]
          Length = 388

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 37/68 (54%), Positives = 53/68 (77%)
 Frame = +3

Query: 225 KKAVLIGCNYPGTNAALRGCINDVWGMKEILITYYGFTDADLTILIDTDKSYLQPTGKNI 404
           K+A+LIG NYPGT   L+GC+NDV  M + L+  +GF + D+T+LIDTD+SY QPTGKNI
Sbjct: 3   KRALLIGINYPGTTEELQGCVNDVHRMHKCLVDRFGFAEEDITVLIDTDESYTQPTGKNI 62

Query: 405 KAKITEMV 428
           +  ++E++
Sbjct: 63  RQALSELI 70

>gb|AAP84709.1| metacaspase 4 [Arabidopsis thaliana]
          Length = 403

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 37/68 (54%), Positives = 53/68 (77%)
 Frame = +3

Query: 225 KKAVLIGCNYPGTNAALRGCINDVWGMKEILITYYGFTDADLTILIDTDKSYLQPTGKNI 404
           K+A+LIG NYPGT   L+GC+NDV  M + L+  +GF + D+T+LIDTD+SY QPTGKNI
Sbjct: 3   KRALLIGINYPGTTEELQGCVNDVHRMHKCLVDRFGFAEEDITVLIDTDESYTQPTGKNI 62

Query: 405 KAKITEMV 428
           +  ++E++
Sbjct: 63  RQALSELI 70



EST assemble image


clone accession position
1 LCL022d04_r AV627186 1 435
2 LCL079f12_r AV630491 19 433




Chlamydomonas reinhardtii
Kazusa DNA Research Institute