KCC003136A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003136A_C01 KCC003136A_c01
cttgcagctatgacaataaacgattagacatacctGTTCTCAGCATTTGCATATTTACCG
CCTCGACTGCAATCCCGAAAGACCAACCGTCAGGCGGGACTCGCGTACTCTGTCAAGGCC
TCCTGAACCTCTTCAGATATAATCGATTATAAAGTCCGCTTGGCACCGCTACATACCTTT
GATTCAACTGCTGAAAATGGCACCCGAGGCGAACTCTTGCTGCGCGAAGGGCCCTGGATA
TGCCACGCCGCTGGATGCCTACAAGAACGGTGCGCGCGAGAAGCTGCTGTACGTGCCGTG
CGTGGTTCCCGACCACTCGCGGCCCGACTACATCGCCACCATCGACGTGGACCCCGAGTC
GGCCACCTACCAGCAGGTCATCCACCGCCTGCCAATGCCGCACCTGGGAGACGAGCTGCA
CCACAGTGGCTGGAACTCGTGCTCCTCCTGCCACGCCGACCCCTCCGCCCCCAAGCGCAA
GTTGCTGGTGCTGCCCGCGCTCGGCTCCGGCCGCGTGTACGGTGTGGACACGCTGACGGA
CCCCCGCGCGCCGCGCATCGGGGCGGTCGCCGAGCCCGAGGACATCCAGGCAGCCACCGG
CCTCAGCTACCTGCACACCAGCCACTGCGCCCCGGACGGCAGCATCATGGTGAGCGCCAT
GGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003136A_C01 KCC003136A_c01
         (663 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB86133.1| putative selenium binding protein [Oryza sativa ...   199  2e-50
emb|CAC67501.1| selenium binding protein [Medicago sativa]            189  2e-47
emb|CAC67491.1| selenium binding protein [Lotus corniculatus var...   185  6e-46
gb|AAM96954.1| selenium-binding protein-like protein [Arabidopsi...   182  5e-45
gb|AAK32898.1|AF367311_1 AT4g14040/dl3061c [Arabidopsis thaliana...   182  5e-45

>dbj|BAB86133.1| putative selenium binding protein [Oryza sativa (japonica
           cultivar-group)] gi|20805006|dbj|BAB92682.1| putative
           selenium binding protein [Oryza sativa (japonica
           cultivar-group)] gi|31322241|gb|AAO91777.1| putative
           selenium binding protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 482

 Score =  199 bits (507), Expect = 2e-50
 Identities = 100/161 (62%), Positives = 117/161 (72%), Gaps = 6/161 (3%)
 Frame = +2

Query: 197 MAPEAN--SCC--AKGPGYATPLDAYKNGAREKLLYVPCVVPDH--SRPDYIATIDVDPE 358
           MA  AN  +CC  A GPGYATPL+A + G REKLLYV CV      ++PDY+ T+DVDP 
Sbjct: 1   MAAAANGAACCGGATGPGYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPN 60

Query: 359 SATYQQVIHRLPMPHLGDELHHSGWNSCSSCHADPSAPKRKLLVLPALGSGRVYGVDTLT 538
           S TY QVIHRLP+ H+GDELHHSGWN+CSSCH DPSA  R+ L+LP+L SGRVY VDTL 
Sbjct: 61  SPTYSQVIHRLPVTHVGDELHHSGWNACSSCHGDPSA-SRRFLILPSLLSGRVYVVDTLK 119

Query: 539 DPRAPRIGAVAEPEDIQAATGLSYLHTSHCAPDGSIMVSAM 661
           DPRAP +  V E EDI   TGL + HTSHC   G IM+S +
Sbjct: 120 DPRAPALHKVVEAEDIAEKTGLGFPHTSHCLASGEIMISCL 160

>emb|CAC67501.1| selenium binding protein [Medicago sativa]
          Length = 488

 Score =  189 bits (481), Expect = 2e-47
 Identities = 88/150 (58%), Positives = 112/150 (74%), Gaps = 2/150 (1%)
 Frame = +2

Query: 218 CCAKGPGYATPLDAYKNGAREKLLYVPCVVPDHS--RPDYIATIDVDPESATYQQVIHRL 391
           CC  GPGYA+PL+A  +G RE L+YV  V       +PDY+AT+D+DP S TY +VIHRL
Sbjct: 20  CCKSGPGYASPLEAM-SGPRETLIYVTAVYAGTGIEKPDYLATVDLDPNSPTYSKVIHRL 78

Query: 392 PMPHLGDELHHSGWNSCSSCHADPSAPKRKLLVLPALGSGRVYGVDTLTDPRAPRIGAVA 571
           P+P++GDELHH+GWNSCSSCH DPSA +R+ L++P + SGRVY +DT T+PRAP +  V 
Sbjct: 79  PVPYVGDELHHTGWNSCSSCHGDPSA-QRRFLIVPGIVSGRVYVIDTKTNPRAPSLHKVV 137

Query: 572 EPEDIQAATGLSYLHTSHCAPDGSIMVSAM 661
           EPEDI   TGL+Y HTSHC   G IM+S +
Sbjct: 138 EPEDISTKTGLAYPHTSHCLASGEIMISCI 167

>emb|CAC67491.1| selenium binding protein [Lotus corniculatus var. japonicus]
           gi|15485718|emb|CAC67492.1| selenium binding protein
           [Lotus corniculatus var. japonicus]
          Length = 487

 Score =  185 bits (469), Expect = 6e-46
 Identities = 84/152 (55%), Positives = 112/152 (73%), Gaps = 2/152 (1%)
 Frame = +2

Query: 212 NSCCAKGPGYATPLDAYKNGAREKLLYVPCVVPDHS--RPDYIATIDVDPESATYQQVIH 385
           N CC  GPGYA+P+++  +G RE L+YV  V       +PDY+AT+DVDP S TY +VIH
Sbjct: 17  NGCCKSGPGYASPIESM-SGPRESLIYVTAVYAGTGIEKPDYLATVDVDPSSPTYSKVIH 75

Query: 386 RLPMPHLGDELHHSGWNSCSSCHADPSAPKRKLLVLPALGSGRVYGVDTLTDPRAPRIGA 565
           RLP+P++GDELHH+GWNSCSSCH DPSA +R+ L+ P+L SGR+Y +DT T+PR+P +  
Sbjct: 76  RLPVPYVGDELHHTGWNSCSSCHGDPSA-ERRFLIAPSLVSGRIYVIDTKTNPRSPSLHK 134

Query: 566 VAEPEDIQAATGLSYLHTSHCAPDGSIMVSAM 661
           V +P DI   TGL+Y HTSHC   G +M+S +
Sbjct: 135 VVDPADIIQKTGLAYPHTSHCLASGELMISCL 166

>gb|AAM96954.1| selenium-binding protein-like protein [Arabidopsis thaliana]
           gi|23198396|gb|AAN15725.1| selenium-binding protein-like
           protein [Arabidopsis thaliana]
          Length = 487

 Score =  182 bits (461), Expect = 5e-45
 Identities = 87/154 (56%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
 Frame = +2

Query: 206 EANSCCAKGPGYATPLDAYKNGAREKLLYVPCVVPDHSR--PDYIATIDVDPESATYQQV 379
           ++  CC  GPGYATPL A   G REKL+YV  +     R  PDY+AT+DVDP S T+  V
Sbjct: 15  KSKGCCKSGPGYATPLAAMA-GPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSV 73

Query: 380 IHRLPMPHLGDELHHSGWNSCSSCHADPSAPKRKLLVLPALGSGRVYGVDTLTDPRAPRI 559
           IHRL MP++GDELHH+GWNSCSSCH D SA  R+ LVLP L SGR+Y +DT TDP+AP +
Sbjct: 74  IHRLKMPYIGDELHHTGWNSCSSCHGDASA-DRRYLVLPGLISGRIYAIDTKTDPKAPSL 132

Query: 560 GAVAEPEDIQAATGLSYLHTSHCAPDGSIMVSAM 661
             V EP++I   TGL++ HTSHC   G ++VS +
Sbjct: 133 YKVVEPKEIAEKTGLAFPHTSHCLASGDMLVSCL 166

>gb|AAK32898.1|AF367311_1 AT4g14040/dl3061c [Arabidopsis thaliana] gi|22137196|gb|AAM91443.1|
           AT4g14040/dl3061c [Arabidopsis thaliana]
          Length = 487

 Score =  182 bits (461), Expect = 5e-45
 Identities = 87/154 (56%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
 Frame = +2

Query: 206 EANSCCAKGPGYATPLDAYKNGAREKLLYVPCVVPDHSR--PDYIATIDVDPESATYQQV 379
           ++  CC  GPGYATPL A   G REKL+YV  +     R  PDY+AT+DVDP S T+  V
Sbjct: 15  KSKGCCKSGPGYATPLAAMA-GPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSV 73

Query: 380 IHRLPMPHLGDELHHSGWNSCSSCHADPSAPKRKLLVLPALGSGRVYGVDTLTDPRAPRI 559
           IHRL MP++GDELHH+GWNSCSSCH D SA  R+ LVLP L SGR+Y +DT TDP+AP +
Sbjct: 74  IHRLKMPYIGDELHHTGWNSCSSCHGDASA-DRRYLVLPGLISGRIYAIDTKTDPKAPSL 132

Query: 560 GAVAEPEDIQAATGLSYLHTSHCAPDGSIMVSAM 661
             V EP++I   TGL++ HTSHC   G ++VS +
Sbjct: 133 YKVVEPKEIAEKTGLAFPHTSHCLASGDMLVSCL 166



EST assemble image


clone accession position
1 LCL045a11_r AV628647 1 380
2 LCL021h10_r AV627154 36 297
3 MXL009f02_r BP093522 144 537
4 LCL021a12_r AV627098 159 433
5 MXL005a09_r BP093213 209 663




Chlamydomonas reinhardtii
Kazusa DNA Research Institute