KCC003130A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003130A_C01 KCC003130A_c01
taaagacttcaagaggtcatgcacctatggatagatgtaaagaagctgagtgtgcatgat
cccactgtgctatttggggtACGACCCGAGGCCAAGCGGCCAGCGTAAAGACTTCACGCC
GCATACCTTTCGGCGCAGCAATTGGGCGCATACCCTTAACATATTCAAGCTGCACATATT
AAGGACACCCACTGGCACTTTGCGCTCGTTTCTTTGCGCTTGTTTCAACATGACAGTGGA
GGGCCCCTTCTCTGAGGGCCCGCAAGACCGCATTCTTGGCCGCGAGCCAACGAGCCAACA
ACCTAACAACAATGAGCAGACGCCTGTAAAGGAGGCCCCGCCAACGCCTTCAACCGGCTC
GGCTGACACTCCAGAGAAGCCCCACCCCGTCAAACGATTTTTCCTTGCGGCGTGGGACCT
CATATGCGAGCACTGGTTTATCCTAGCGCTCGGGTTTGCCATCGGCTTTGCCAAAGCGGT
GCCTGACTTCGGTCGCAATGGCGGGTGGATCGCTGCGCAGTGGACCATCAAATACGGCGC
TGTTATCATCATCTTCTTTCTGTCAGGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003130A_C01 KCC003130A_c01
         (569 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_013748.1| Hypothetical ORF; Ymr034cp [Saccharomyces cerev...    44  0.002
dbj|BAC37779.1| unnamed protein product [Mus musculus]                 42  0.005
dbj|BAC30613.1| unnamed protein product [Mus musculus]                 42  0.005
dbj|BAB27214.1| unnamed protein product [Mus musculus]                 42  0.005
ref|XP_134313.1| RIKEN cDNA 2410193C02 [Mus musculus]                  42  0.005

>ref|NP_013748.1| Hypothetical ORF; Ymr034cp [Saccharomyces cerevisiae]
           gi|2497127|sp|Q05131|YMS4_YEAST Hypothetical 48.4 kDa
           protein in ARP9-IMP2 intergenic region
           gi|1078023|pir||S53951 probable membrane protein YMR034c
           - yeast (Saccharomyces cerevisiae)
           gi|798960|emb|CAA89150.1| unknown [Saccharomyces
           cerevisiae]
          Length = 434

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +2

Query: 416 DLICEHWFILALGFAIGFAKAVPDFGRNGGWIAAQWTIKYGAVIIIFFLSG 568
           + +   WF + L   I  A+  P+F R+GG I  Q++I YG V  IF  SG
Sbjct: 18  EFLKSQWFFICLAILIVIARFAPNFARDGGLIKGQYSIGYGCVAWIFLQSG 68

>dbj|BAC37779.1| unnamed protein product [Mus musculus]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 21/47 (44%), Positives = 28/47 (58%)
 Frame = +2

Query: 428 EHWFILALGFAIGFAKAVPDFGRNGGWIAAQWTIKYGAVIIIFFLSG 568
           + WF++ +  AIG AK  P  G NGG +  + T+ Y AV  IFF SG
Sbjct: 9   KEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSG 55

>dbj|BAC30613.1| unnamed protein product [Mus musculus]
          Length = 171

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 21/47 (44%), Positives = 28/47 (58%)
 Frame = +2

Query: 428 EHWFILALGFAIGFAKAVPDFGRNGGWIAAQWTIKYGAVIIIFFLSG 568
           + WF++ +  AIG AK  P  G NGG +  + T+ Y AV  IFF SG
Sbjct: 9   KEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSG 55

>dbj|BAB27214.1| unnamed protein product [Mus musculus]
          Length = 340

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 21/47 (44%), Positives = 28/47 (58%)
 Frame = +2

Query: 428 EHWFILALGFAIGFAKAVPDFGRNGGWIAAQWTIKYGAVIIIFFLSG 568
           + WF++ +  AIG AK  P  G NGG +  + T+ Y AV  IFF SG
Sbjct: 9   KEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSG 55

>ref|XP_134313.1| RIKEN cDNA 2410193C02 [Mus musculus]
          Length = 340

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 21/47 (44%), Positives = 28/47 (58%)
 Frame = +2

Query: 428 EHWFILALGFAIGFAKAVPDFGRNGGWIAAQWTIKYGAVIIIFFLSG 568
           + WF++ +  AIG AK  P  G NGG +  + T+ Y AV  IFF SG
Sbjct: 9   KEWFMVGIVVAIGAAKLEPSVGVNGGPLKPEITVSYIAVATIFFNSG 55



EST assemble image


clone accession position
1 LCL082a04_r AV630645 1 441
2 LCL045b01_r AV628649 142 434
3 LCL019h09_r AV627020 153 569
4 LCL032a04_r AV627785 171 457




Chlamydomonas reinhardtii
Kazusa DNA Research Institute