KCC003126A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003126A_C01 KCC003126A_c01
ggcgagcggggctggcggcagtgcttgcatggatatggagggtgcctcggcagcagcagc
agcagcggcggcatctgcggCTGCGACGGCGGCCCTGCAGCGGCGTCTTGGGAAGGGTGC
CGGGCGAGCCTCGTGTTCGGCGCTTCATTTGTCCACATCCGCGTCATCACCGACTGCGCC
GCCTCTGCCGGCTGCGTCACATTCTGCTCGTGGCTCCTTGAGCAACGCGCTGTGGATGCC
TCGGCCGCCCCTCTCGGCAAGCGCTACCTCCTCATCTTTGAATCCTCACGTCTCAACGCC
GTCGGCGCTTCCTGCGATGCCCGCCGTGCCGCCGTCCGCGCGAGACCTGCTGCACCGCTG
CGCTACGCACCTTCAGCTGCTGTTCCAGTGGCACCCGGCGCAGCTGTCGTTCGCGGTGCC
CTACCTGGCCGAGTACCTGTCCGCCGCGCCCGACGTGGTGGCCTGGGGCTCCGGCTCGCC
GTACTTCTCGCTCCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003126A_C01 KCC003126A_c01
         (496 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir...    42  8e-05
sp|P14328|SP96_DICDI Spore coat protein SP96 gi|84145|pir||S0763...    46  2e-04
gb|AAO50776.1| similar to Dictyostelium discoideum (Slime mold)....    46  2e-04
dbj|BAA20035.1| tegument protein [Equine herpesvirus 1]                45  5e-04
ref|ZP_00030917.1| COG1674: DNA segregation ATPase FtsK/SpoIIIE ...    45  5e-04

>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
          Length = 3326

 Score = 42.4 bits (98), Expect(2) = 8e-05
 Identities = 34/107 (31%), Positives = 49/107 (45%)
 Frame = +2

Query: 11   AGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAPPLP 190
            A G A      A+ AA AA A+ AA AA        A  A+ +A     + ++P AP  P
Sbjct: 2846 AAGRASAPPAPAAPAAPAAPAAPAAPAA-------PAAPAAPAAPAAPAAPAAPAAPAAP 2898

Query: 191  AASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVP 331
            AA  +     + A   P  P + +A ++   P    P+A+PA PA P
Sbjct: 2899 AAPAAPAAPAAPAA--PAAPAAPAAPAAPAAPAAPAPAAVPAAPAAP 2943

 Score = 36.2 bits (82), Expect = 0.23
 Identities = 34/110 (30%), Positives = 52/110 (46%), Gaps = 12/110 (10%)
 Frame = +2

Query: 44   ASAAAAAAAASAA----ATAALQRRLGKGAGRASCSALHLSTSASSPTAPPLPAASHSAR 211
            A AA AA AA AA    A AA+       A  A+ +A     + ++P AP  PAA   A 
Sbjct: 2915 APAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPA- 2973

Query: 212  GSLSNALWMPRPPLSASATSSSLNPHVSTP--------SALPAMPAVPPS 337
               +  + +P P  + +AT+++     +TP        S+LP  P+ PP+
Sbjct: 2974 ---AVPVVVPAPTATLTATTTTSPAPAATPASPVPTPTSSLPTPPSKPPA 3020

 Score = 35.4 bits (80), Expect = 0.39
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +2

Query: 44   ASAAAAAAAASAA-ATAALQRRLGKGAGRASCSALHLSTSASSPTAPPLPAASHSARGSL 220
            A AA AA AA AA A  A        A  A+ +A     + ++P AP  PAA  +   + 
Sbjct: 2876 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAA 2935

Query: 221  SNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVPPSA 340
              A   P  P + +A ++   P      A PA PA P  A
Sbjct: 2936 VPA--APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPA 2973

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 22/76 (28%), Positives = 31/76 (39%), Gaps = 5/76 (6%)
 Frame = +2

Query: 119  AGRASCSALHLSTSASSPTAP-----PLPAASHSARGSLSNALWMPRPPLSASATSSSLN 283
            A  AS +      +A+ PT P     P P  + + R S   A   P  P + +A ++   
Sbjct: 2814 ATTASATPAPPPVAATGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAA 2873

Query: 284  PHVSTPSALPAMPAVP 331
            P      A PA PA P
Sbjct: 2874 PAAPAAPAAPAAPAAP 2889

 Score = 24.6 bits (52), Expect(2) = 8e-05
 Identities = 19/39 (48%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
 Frame = +1

Query: 331  AVRARPAAPLRYAPSA-AVPVAPGAAVVRGA-LPGRVPV 441
            A  A PAAP   AP+A A P AP A     A  P  VPV
Sbjct: 2941 AAPAAPAAPA--APAAPAAPAAPAAPAAPAAPAPAAVPV 2977

>sp|P14328|SP96_DICDI Spore coat protein SP96 gi|84145|pir||S07638 spore coat protein
           SP96 precursor - slime mold  (Dictyostelium discoideum)
           gi|295736|emb|CAA34508.1| spore coat protein sp96
           [Dictyostelium discoideum]
          Length = 600

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 30/102 (29%), Positives = 56/102 (54%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           +S +G SA       S+AA+++ +S+AA+++        +  +S ++   S+SASS ++P
Sbjct: 438 SSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSP 497

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSA 307
              A+S SA  S +++   P    S+S+ SSS     +T +A
Sbjct: 498 SSSASSSSAPSSSASSSSAPSSSASSSSASSSSASSAATTAA 539

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 34/122 (27%), Positives = 59/122 (47%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           +S  G ++     G+SA +++A+ S+AA+++        A  +S S+   S+S SS  A 
Sbjct: 429 SSALGSTSESSASGSSAVSSSASGSSAASSSPS----SSAASSSPSSSAASSSPSSSAAS 484

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVPPSARDLLHRC 361
             P++S S+  S S++        S+SA SSS +   +  S+  +  A   SA       
Sbjct: 485 SSPSSSASSSSSPSSSA------SSSSAPSSSASSSSAPSSSASSSSASSSSASSAATTA 538

Query: 362 AT 367
           AT
Sbjct: 539 AT 540

>gb|AAO50776.1| similar to Dictyostelium discoideum (Slime mold). Spore coat
           protein SP96
          Length = 600

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 30/102 (29%), Positives = 56/102 (54%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           +S +G SA       S+AA+++ +S+AA+++        +  +S ++   S+SASS ++P
Sbjct: 438 SSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSP 497

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSA 307
              A+S SA  S +++   P    S+S+ SSS     +T +A
Sbjct: 498 SSSASSSSAPSSSASSSSAPSSSASSSSASSSSASSAATTAA 539

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 34/122 (27%), Positives = 59/122 (47%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           +S  G ++     G+SA +++A+ S+AA+++        A  +S S+   S+S SS  A 
Sbjct: 429 SSALGSTSESSASGSSAVSSSASGSSAASSSPS----SSAASSSPSSSAASSSPSSSAAS 484

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVPPSARDLLHRC 361
             P++S S+  S S++        S+SA SSS +   +  S+  +  A   SA       
Sbjct: 485 SSPSSSASSSSSPSSSA------SSSSAPSSSASSSSAPSSSASSSSASSSSASSAATTA 538

Query: 362 AT 367
           AT
Sbjct: 539 AT 540

>dbj|BAA20035.1| tegument protein [Equine herpesvirus 1]
          Length = 503

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 36/113 (31%), Positives = 54/113 (46%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           A  A   A    + A+A AAA A SAAA AA   +       A+ +A    ++A+   AP
Sbjct: 162 AKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAK-----SAAAPAAAPAKSAAAPAAAP 216

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVPPSA 340
              AA+ +A  + S A     P  SA+A +++     + P+A PA  A  P+A
Sbjct: 217 AKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAA 269

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 36/113 (31%), Positives = 54/113 (46%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           A  A   A    + A+A AAA A SAAA AA   +       A+ +A    ++A+   AP
Sbjct: 151 AKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAK-----SAAAPAAAPAKSAAAPAAAP 205

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVPPSA 340
              AA+ +A  + S A     P  SA+A +++     + P+A PA  A  P+A
Sbjct: 206 AKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAA 258

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 34/106 (32%), Positives = 52/106 (48%)
 Frame = +2

Query: 23  ACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAPPLPAASH 202
           A    + A+A AAA A SAAA AA   +       A+ +A    ++A+   AP   AA+ 
Sbjct: 147 AAAPAKSAAAPAAAPAKSAAAPAAAPAK-----SAAAPAAAPAKSAAAPAAAPAKSAAAP 201

Query: 203 SARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPAMPAVPPSA 340
           +A  + S A     P  SA+A +++     + P+A PA  A  P+A
Sbjct: 202 AAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAA 247

 Score = 34.3 bits (77), Expect = 0.87
 Identities = 25/82 (30%), Positives = 37/82 (44%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           A  A   A    + A+A AAA A SAAA AA   +    A  A+  A   +  A++P   
Sbjct: 206 AKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAK--SAAAPAAAPAKSAAAPAAAPAKS 263

Query: 182 PLPAASHSARGSLSNALWMPRP 247
               A+  A+    +A  +P+P
Sbjct: 264 AAAPAAAPAKDQTKSAAEVPKP 285

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           A+ A  +A      A +AAA AAA A + AA      K A   + +    + SA++P A 
Sbjct: 181 AAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAP---AKSAAAPAAA 237

Query: 182 PLPAASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPA------MPAVPPSAR 343
           P  +A+  A            P  SA+A +++     + P+A PA         VP  A+
Sbjct: 238 PAKSAAAPAAA----------PAKSAAAPAAAPAKSAAAPAAAPAKDQTKSAAEVPKPAK 287

Query: 344 D 346
           D
Sbjct: 288 D 288

>ref|ZP_00030917.1| COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins
           [Burkholderia fungorum]
          Length = 1430

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
 Frame = +2

Query: 2   ASGAGGSACMDMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAP 181
           A+GA G+A     GA+  A AAAA+ AATAA   +        +  A H + + ++ TA 
Sbjct: 317 AAGAAGAA--GAVGATGTANAAAAAGAATAARTAQ--------AAHAGHAAATRTTATAR 366

Query: 182 PLP-AASHSARGSLSNALWMPRPPLSASATSSSLNPHVSTPSALPA 316
            +P AASHSA G   N     RP  +A  T++ ++    T + L A
Sbjct: 367 AVPGAASHSATGDTGNTSGEGRPSTTAKGTTAPVSSVNRTAAPLQA 412

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 25/92 (27%), Positives = 36/92 (38%)
 Frame = +2

Query: 32  DMEGASAAAAAAAASAAATAALQRRLGKGAGRASCSALHLSTSASSPTAPPLPAASHSAR 211
           D    +AAAAA   +AA  A    R G  A R+  +         + T PP      +  
Sbjct: 178 DAAAGAAAAAAGKDAAARGAGASWRTGAAAPRSQAAQAEPVLRTGAATTPPRHVPMQTQP 237

Query: 212 GSLSNALWMPRPPLSASATSSSLNPHVSTPSA 307
            +   A WMP  P++ +       PH + P A
Sbjct: 238 LNADKAAWMPAEPVAPAGWLRGAGPHAAAPVA 269



EST assemble image


clone accession position
1 LCL019a01_r AV626963 1 470
2 LCL077a06_r AV630309 316 496




Chlamydomonas reinhardtii
Kazusa DNA Research Institute