KCC003120A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003120A_C01 KCC003120A_c01
taataattacaagCTCCTCGCAAACAGCGCCGGATTTGCTCCGCCGTCCCAAGAGTCAAG
ATTTGCGAAATGCGTCTTTTAGCAACCGGTCCCTGTAAGGCCAATGGTAAACAGAGATTT
CTATCACTTCCTACCTGTTGTGACCTGAGGGGCACTGCGGTCCCTTCAACTCTGGCTGCC
CTAGTTTTGACTGGGGCCGGCCTTGCGTTGCCGGCGGCAGCACACGCTGCTCAGGTGGGG
CTCCATTTGGATACGGCCGGCGGCGAGGGGCGCCTCCTGCCGTGCGCGCCCAAAACCAGC
TGCGTCTCCTCTGCCAACTTCCTGTCGCCGTCACAGTACCTGGCGCCTTGGAGCTTCGAC
CCCAAGACCCCCGCAGCTGCCAAAAGGCAGCTTCTGGACGAGCTGGTCGAGGCCCGGGGT
GGCCAGGTGGTGGGCGAGGACGAGGGCCGTGGCTACGTGGCAGTAAGGGTGCCGTACAAG
CTAGGTGCAGGCAAGAGCGATGTAGACCTGATGGAGTTCAAGTTCACAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003120A_C01 KCC003120A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C29149 proline-rich protein - mouse (fragment) gi|200545|gb...    43  0.003
pir||A24264 proline-rich protein MP2 - mouse (fragment)                43  0.003
ref|NP_035304.2| proline rich protein HaeIII subfamily 1 [Mus mu...    43  0.003
dbj|BAB24858.1| unnamed protein product [Mus musculus]                 42  0.004
sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 gi|200549|gb|AAA4...    42  0.004

>pir||C29149 proline-rich protein - mouse (fragment) gi|200545|gb|AAA40003.1|
           proline-rich salivary protein
          Length = 227

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 36/107 (33%), Positives = 44/107 (40%), Gaps = 3/107 (2%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q+R     
Sbjct: 53  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQPRPPQGPPPPGGPQQRPP--Q 106

Query: 289 ARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQCP 149
                G P+ RP P G PP     P   QG P    G P+L+ PQ P
Sbjct: 107 GPPPPGGPQPRP-PQGPPPPGGPQPRPPQGPPPP--GGPQLRPPQGP 150

 Score = 36.6 bits (83), Expect = 0.21
 Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q R     
Sbjct: 67  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQQRPPQGPPPPGGPQPRPPQ-- 120

Query: 289 ARTAGGAPRRRPYPNGAPP-------EQRVLPPATQGRPQSKLGQPELKGPQ 155
                G P+ RP P G PP         +  PP    +P+   G P   GPQ
Sbjct: 121 GPPPPGGPQPRP-PQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQ 171

 Score = 35.4 bits (80), Expect = 0.46
 Identities = 33/105 (31%), Positives = 40/105 (37%), Gaps = 3/105 (2%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+       G   R ++ P                 
Sbjct: 151 PPPAGPQPRPPQGPPPPAGPQPRPPQGP--PPTGPQPRPTQGPPPT-------------- 194

Query: 289 ARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQ 155
                G P++RP P G PP     P   Q RP    G P   GPQ
Sbjct: 195 -----GGPQQRP-PQGPPP-----PGGPQLRPPQ--GPPPPAGPQ 226

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 34/107 (31%), Positives = 40/107 (36%), Gaps = 3/107 (2%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+   P+          G   + P      G  Q R     
Sbjct: 81  PPPGGPQPRPPQGPPPPGGPQQRPPQGP----PPPGGPQPRPPQGPPPPGGPQPRPPQ-- 134

Query: 289 ARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQCP 149
                G P+ RP P G PP     P   QG P     QP  + PQ P
Sbjct: 135 GPPPPGGPQLRP-PQGPPPPAGPQPRPPQGPPPPAGPQP--RPPQGP 178

>pir||A24264 proline-rich protein MP2 - mouse (fragment)
          Length = 240

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 36/107 (33%), Positives = 44/107 (40%), Gaps = 3/107 (2%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q R     
Sbjct: 32  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQPRPPQGPPPPGGPQPRPP--Q 85

Query: 289 ARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQCP 149
                G P++RP P G PP     P   QG P    G P+L+ PQ P
Sbjct: 86  GPPPPGGPQQRP-PQGPPPPGGPQPRPPQGPPPP--GGPQLRPPQGP 129

 Score = 38.5 bits (88), Expect = 0.055
 Identities = 34/108 (31%), Positives = 40/108 (36%), Gaps = 6/108 (5%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+   P+          G   + P      G  Q R     
Sbjct: 74  PPPGGPQPRPPQGPPPPGGPQQRPPQGP----PPPGGPQPRPPQGPPPPGGPQLRPPQGP 129

Query: 289 ARTAGGAPRRR---PYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQ 155
              AG  PR     P P G  P     PP T  +P+   G P   GPQ
Sbjct: 130 PPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTGPQPRPTQGPPPTGGPQ 177

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q+R     
Sbjct: 46  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQPRPPQGPPPPGGPQQRPPQ-- 99

Query: 289 ARTAGGAPRRRPYPNGAPP-------EQRVLPPATQGRPQSKLGQPELKGPQ 155
                G P+ RP P G PP         +  PP    +P+   G P   GPQ
Sbjct: 100 GPPPPGGPQPRP-PQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQ 150

 Score = 37.0 bits (84), Expect = 0.16
 Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
 Frame = -2

Query: 460 PRSHGPRPRPP-----PGHPGPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSW 296
           P   GP+PRPP     P  P PRP +         G   R ++ P     TG  Q+R   
Sbjct: 130 PPPAGPQPRPPQGPPPPAGPQPRPPQGPPT----TGPQPRPTQGP---PPTGGPQQRPP- 181

Query: 295 FWARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGP 158
                  G P+ RP P G PP     P  TQG P +  G P+   P
Sbjct: 182 -QGPPPPGGPQPRP-PQGPPPPGGPQPSPTQGPPPT--GGPQQTPP 223

>ref|NP_035304.2| proline rich protein HaeIII subfamily 1 [Mus musculus]
           gi|130999|sp|P05142|PRP2_MOUSE Proline-rich protein MP-2
           precursor gi|200547|gb|AAA40004.1| proline-rich protein
          Length = 261

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 36/107 (33%), Positives = 44/107 (40%), Gaps = 3/107 (2%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q R     
Sbjct: 53  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQPRPPQGPPPPGGPQPRPP--Q 106

Query: 289 ARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQCP 149
                G P++RP P G PP     P   QG P    G P+L+ PQ P
Sbjct: 107 GPPPPGGPQQRP-PQGPPPPGGPQPRPPQGPPPP--GGPQLRPPQGP 150

 Score = 38.5 bits (88), Expect = 0.055
 Identities = 34/108 (31%), Positives = 40/108 (36%), Gaps = 6/108 (5%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+   P+          G   + P      G  Q R     
Sbjct: 95  PPPGGPQPRPPQGPPPPGGPQQRPPQGP----PPPGGPQPRPPQGPPPPGGPQLRPPQGP 150

Query: 289 ARTAGGAPRRR---PYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQ 155
              AG  PR     P P G  P     PP T  +P+   G P   GPQ
Sbjct: 151 PPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTGPQPRPTQGPPPTGGPQ 198

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q+R     
Sbjct: 67  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQPRPPQGPPPPGGPQQRPPQ-- 120

Query: 289 ARTAGGAPRRRPYPNGAPP-------EQRVLPPATQGRPQSKLGQPELKGPQ 155
                G P+ RP P G PP         +  PP    +P+   G P   GPQ
Sbjct: 121 GPPPPGGPQPRP-PQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQ 171

 Score = 35.4 bits (80), Expect = 0.46
 Identities = 34/106 (32%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
 Frame = -2

Query: 460 PRSHGPRPRPP-----PGHPGPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSW 296
           P   GP+PRPP     P  P PRP +         G   R ++ P     TG  Q++   
Sbjct: 151 PPPAGPQPRPPQGPPPPAGPQPRPPQGPPT----TGPQPRPTQGP---PPTGGPQQQPP- 202

Query: 295 FWARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGP 158
                  G P+ RP P G PP     P  TQG P +  G P+   P
Sbjct: 203 -QGPPPPGGPQPRP-PQGPPPPGGPQPSPTQGPPPT--GGPQQTPP 244

>dbj|BAB24858.1| unnamed protein product [Mus musculus]
          Length = 164

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -1

Query: 449 RPSSSPTTWPPRASTSSSRSCLLAAAG-----VLGSKLQGARYCDGDRKLAEETQLVLGA 285
           RPS+SP  WPP    SSSRS  L   G       GS+L+GAR+     +   +T    G+
Sbjct: 48  RPSASPAPWPPNTRRSSSRSGWLPPGGPSRWRAAGSRLRGARFQPWS-QAPRDTAGRTGS 106

Query: 284 HGRRRPSPP 258
              R P PP
Sbjct: 107 PAARPPPPP 115

>sp|P05143|PMP3_MOUSE Proline-rich protein MP-3 gi|200549|gb|AAA40005.1| proline-rich
           protein MP-3
          Length = 296

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 37/108 (34%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P RP        G   R ++ P     TG  Q+R     
Sbjct: 130 PPPGGPQPRPPQGPPPPAGPQP-RPPQGPPPPAGPHLRPTQGP---PPTGGPQQRYPQSP 185

Query: 289 ARTAGGAPRRR---PYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQ 155
               G  PR     P P G  P     PP T  +P+   G P   GPQ
Sbjct: 186 PPPGGPQPRPPQGPPPPGGPHPRPTQGPPPTGPQPRPTQGPPPTGGPQ 233

 Score = 37.7 bits (86), Expect = 0.093
 Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHP---GPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFW 290
           P   GP+PRPP G P   GP+P  P+          G   + P      G  Q R     
Sbjct: 32  PPPGGPQPRPPQGPPPPGGPQPRPPQGP----PPPGGPQPRPPQGPPPPGGPQPRPPQGP 87

Query: 289 ARTAGGAPR--RRPYPNGAPPEQRVLPPATQGRPQSK--LGQPELKGPQ 155
               G  PR  + P P G P ++    P   G PQ +   G P   GPQ
Sbjct: 88  PPPGGPQPRPPQGPPPPGGPQQRPPQGPPPPGGPQQRPPQGPPPPGGPQ 136

 Score = 35.0 bits (79), Expect = 0.60
 Identities = 34/107 (31%), Positives = 41/107 (37%), Gaps = 1/107 (0%)
 Frame = -2

Query: 460 PRSHGPRPRPPPGHPGPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRRRSWFWART 281
           P   GP+PRPP G P P    P            R ++ P     TG   R         
Sbjct: 186 PPPGGPQPRPPQGPPPPGGPHP------------RPTQGP---PPTGPQPRPTQ---GPP 227

Query: 280 AGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPE-LKGPQCPSG 143
             G P++RP P G PP     P   QG P     QP   +GP  P+G
Sbjct: 228 PTGGPQQRP-PQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPH-PTG 272

 Score = 32.7 bits (73), Expect = 3.0
 Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
 Frame = -2

Query: 460 PRSHGPRPR--------PPPGHPGPRPARPEAAFWQLRGSWGRSSKAPGTVTATGSWQRR 305
           P    PRP         PPPG P PRP +            G   + P      G  Q R
Sbjct: 15  PSGSQPRPPVNGSQQGPPPPGGPQPRPPQGPPP------PGGPQPRPPQGPPPPGGPQPR 68

Query: 304 RSWFWARTAGGAPRRRPYPNGAPPEQRVLPPATQGRPQSKLGQPELKGPQCP 149
                     G P+ RP P G PP     P   QG P    G P+ + PQ P
Sbjct: 69  PP--QGPPPPGGPQPRP-PQGPPPPGGPQPRPPQGPPPP--GGPQQRPPQGP 115



EST assemble image


clone accession position
1 LCL096a01_r AV631544 1 530
2 LCL018b01_r AV626918 14 455




Chlamydomonas reinhardtii
Kazusa DNA Research Institute