KCC003116A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003116A_C01 KCC003116A_c01
caattgTATAAGTAGGCCGCATCGATTGTACTCGACTATAGCGGGGGCGTCCGCACGTGC
CGCAATAGCAGCATTACAAAAACCCTTGATATTAGCGACACGCTCGAACACTTCCGCGAT
GGCGAGCAAGGAGGAGCTGGAGGCAGCGGCCATCTCGCTATTCCTTGGTATCGGCCTGGA
GGAGACCGTCGCAAAGAATGCGACGAAGAATCCCAAGTTCATGAAAACACTTGAGGAAGT
GGTGCACGAAGCTGGCGCGGCATCGGGCTGCCCGAAGGCGAAGGGCAACCTGCTTTATAC
CGTTGCTAGCAAGTACCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003116A_C01 KCC003116A_c01
         (318 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173906.2| glutamine-tRNA ligase (glutaminyl-tRNA syntheta...    60  6e-09
gb|AAG28806.2|AC079374_9 tRNA-glutamine synthetase, putative [Ar...    60  6e-09
sp|P52780|SYQ_LUPLU GLUTAMINYL-TRNA SYNTHETASE (GLUTAMINE--TRNA ...    60  6e-09
pir||D86383 probable glutaminyl-tRNA synthetase (glnrs) [importe...    60  6e-09
sp|P14325|SYQ_DICDI PROBABLE GLUTAMINYL-TRNA SYNTHETASE (GLUTAMI...    60  8e-09

>ref|NP_173906.2| glutamine-tRNA ligase (glutaminyl-tRNA synthetase) (GlnRS),
           putative [Arabidopsis thaliana]
           gi|17065036|gb|AAL32672.1| Unknown protein [Arabidopsis
           thaliana] gi|21387137|gb|AAM47972.1| unknown protein
           [Arabidopsis thaliana]
          Length = 795

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/66 (42%), Positives = 39/66 (58%)
 Frame = +2

Query: 119 MASKEELEAAAISLFLGIGLEETVAKNATKNPKFMKTLEEVVHEAGAASGCPKAKGNLLY 298
           M  K++    +I LF+ IGL+E  A+N   N K    L  V+HEA    GC +  GNLLY
Sbjct: 1   MVLKDDNSEKSIELFISIGLDEKTARNTINNNKVTANLTAVIHEAAVTDGCDRNTGNLLY 60

Query: 299 TVASKY 316
           +VA+K+
Sbjct: 61  SVATKF 66

>gb|AAG28806.2|AC079374_9 tRNA-glutamine synthetase, putative [Arabidopsis thaliana]
          Length = 786

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/66 (42%), Positives = 39/66 (58%)
 Frame = +2

Query: 119 MASKEELEAAAISLFLGIGLEETVAKNATKNPKFMKTLEEVVHEAGAASGCPKAKGNLLY 298
           M  K++    +I LF+ IGL+E  A+N   N K    L  V+HEA    GC +  GNLLY
Sbjct: 1   MVLKDDNSEKSIELFISIGLDEKTARNTINNNKVTANLTAVIHEAAVTDGCDRNTGNLLY 60

Query: 299 TVASKY 316
           +VA+K+
Sbjct: 61  SVATKF 66

>sp|P52780|SYQ_LUPLU GLUTAMINYL-TRNA SYNTHETASE (GLUTAMINE--TRNA LIGASE) (GLNRS)
           gi|7437754|pir||T09643 glutamine-tRNA ligase (EC
           6.1.1.18) - yellow lupine gi|2995455|emb|CAA62901.1|
           tRNA-glutamine synthetase [Lupinus luteus]
          Length = 794

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/56 (50%), Positives = 36/56 (64%)
 Frame = +2

Query: 149 AISLFLGIGLEETVAKNATKNPKFMKTLEEVVHEAGAASGCPKAKGNLLYTVASKY 316
           ++ LFL IGL+E  AKN   N K    L  V+++AG   GC +  GNLLYTVA+KY
Sbjct: 14  SLELFLKIGLDERTAKNTVANNKVTTNLTSVINDAGVTDGCSRTVGNLLYTVATKY 69

>pir||D86383 probable glutaminyl-tRNA synthetase (glnrs) [imported] -
           Arabidopsis thaliana
          Length = 729

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/66 (42%), Positives = 39/66 (58%)
 Frame = +2

Query: 119 MASKEELEAAAISLFLGIGLEETVAKNATKNPKFMKTLEEVVHEAGAASGCPKAKGNLLY 298
           M  K++    +I LF+ IGL+E  A+N   N K    L  V+HEA    GC +  GNLLY
Sbjct: 1   MVLKDDNSEKSIELFISIGLDEKTARNTINNNKVTANLTAVIHEAAVTDGCDRNTGNLLY 60

Query: 299 TVASKY 316
           +VA+K+
Sbjct: 61  SVATKF 66

>sp|P14325|SYQ_DICDI PROBABLE GLUTAMINYL-TRNA SYNTHETASE (GLUTAMINE--TRNA LIGASE)
           (GLNRS) (VEGETATIVE SPECIFIC PROTEIN H4)
           gi|84113|pir||S07563 glutamine-tRNA ligase (EC 6.1.1.18)
           - slime mold  (Dictyostelium discoideum) (fragment)
           gi|7292|emb|CAA33446.1| unnamed protein product
           [Dictyostelium discoideum]
          Length = 287

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 31/70 (44%), Positives = 44/70 (62%)
 Frame = +2

Query: 107 NTSAMASKEELEAAAISLFLGIGLEETVAKNATKNPKFMKTLEEVVHEAGAASGCPKAKG 286
           +T    +K+EL    ++LF  IGL+ + AK  T N      L+E++ EAGA SGC K+ G
Sbjct: 2   STKPTINKDEL----VTLFSQIGLDSSKAKETTNNATLSSNLQEIIKEAGAESGCEKSVG 57

Query: 287 NLLYTVASKY 316
            LLYT+A+KY
Sbjct: 58  LLLYTLATKY 67



EST assemble image


clone accession position
1 MXL017a06_r BP094016 1 318
2 LCL017b06_r AV626876 7 311




Chlamydomonas reinhardtii
Kazusa DNA Research Institute