KCC003111A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003111A_C01 KCC003111A_c01
agacgctcgcgcgtgcatccaaccgccacgaaccctttggaagccccttcaaactccacg
cacgcccgaaggctcgctcgGCGCGCGCCTGAAGCCGCAGAAGCGCAGCACTCTAGATGG
CGACGGCGCTCAGGCATACCAGGGCCATGCAGCACAATGCTGTGGCCAAACCCCGGCGGG
CCTTGGACGGGGCTCGCTGCACACCGCCACGGCGGCCCTCGATGCGGCAGCGGAACATCG
CGGTTTTGGTCACCGCAACAGCCGCTGCTCGACGCTGCCCCTACGAGGTGCTGGGCCTCA
GCCGCACAGCCTCGGCCGACGACGTCAAGTCCGCGTTCCGGCGCATGGCCAAGGCGATGC
ACCCAGACGTGGCGGGCCGGGCCTACCTGCCCGAAGAGTTCCTGGCGCTCAAGGAAGCGT
ATGACATGCTCAGTGACCCCGCAGCACGAGCCACCTACGACCGCACCTGGCAGCTGCAGG
AGCATCACCAGCAATGGAGTGGCACTGTGCCCGGTGTCATCCGGCCGGTGGCCAGGTCGG
CGTCCGCGGCGCGCTCCGCCTCCGCCTCCCGCGTGTCGAGGTCCACGAGCGCGGCGGCGA
GGTCTACCAGTGCGGCGTCGCGCTCCGCGTCTTCGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003111A_C01 KCC003111A_c01
         (639 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_464997.1| heat shock protein DnaJ [Listeria monocytogenes...    72  5e-12
ref|NP_470845.1| heat shock protein DnaJ [Listeria innocua] gi|2...    72  5e-12
ref|ZP_00019216.1| hypothetical protein [Chloroflexus aurantiacus]     71  1e-11
ref|ZP_00031960.1| COG2214: DnaJ-class molecular chaperone [Burk...    71  2e-11
sp|Q9LCQ4|DNAJ_BRECH Chaperone protein dnaJ gi|6855462|dbj|BAA90...    70  3e-11

>ref|NP_464997.1| heat shock protein DnaJ [Listeria monocytogenes EGD-e]
           gi|11132461|sp|Q9S5A3|DNAJ_LISMO Chaperone protein dnaJ
           gi|11277162|pir||T43739 heat shock protein dnaJ
           [imported] - Listeria monocytogenes
           gi|25296033|pir||AH1258 heat shock protein DnaJ
           [imported] - Listeria monocytogenes  (strain EGD-e)
           gi|5689040|dbj|BAA82790.1| DnaJ [Listeria monocytogenes]
           gi|16410901|emb|CAC99550.1| heat shock protein DnaJ
           [Listeria monocytogenes]
          Length = 377

 Score = 72.4 bits (176), Expect = 5e-12
 Identities = 33/66 (50%), Positives = 48/66 (72%)
 Frame = +3

Query: 267 ARRCPYEVLGLSRTASADDVKSAFRRMAKAMHPDVAGRAYLPEEFLALKEAYDMLSDPAA 446
           A+R  YEVLG+S++ASAD++K A+R+++K  HPD+   A   E+F  + EAY+ LSDP  
Sbjct: 2   AKRDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 447 RATYDR 464
           RA YD+
Sbjct: 62  RAQYDQ 67

>ref|NP_470845.1| heat shock protein DnaJ [Listeria innocua]
           gi|20137854|sp|Q92BN9|DNAJ_LISIN Chaperone protein dnaJ
           gi|25296032|pir||AD1621 heat shock protein DnaJ
           [imported] - Listeria innocua  (strain Clip11262)
           gi|16413982|emb|CAC96740.1| heat shock protein DnaJ
           [Listeria innocua]
          Length = 376

 Score = 72.4 bits (176), Expect = 5e-12
 Identities = 33/66 (50%), Positives = 48/66 (72%)
 Frame = +3

Query: 267 ARRCPYEVLGLSRTASADDVKSAFRRMAKAMHPDVAGRAYLPEEFLALKEAYDMLSDPAA 446
           A+R  YEVLG+S++ASAD++K A+R+++K  HPD+   A   E+F  + EAY+ LSDP  
Sbjct: 2   AKRDYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQK 61

Query: 447 RATYDR 464
           RA YD+
Sbjct: 62  RAQYDQ 67

>ref|ZP_00019216.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 97

 Score = 71.2 bits (173), Expect = 1e-11
 Identities = 35/72 (48%), Positives = 49/72 (67%)
 Frame = +3

Query: 249 VTATAAARRCPYEVLGLSRTASADDVKSAFRRMAKAMHPDVAGRAYLPEEFLALKEAYDM 428
           ++ TA A+R  YEVLG+SR+A+ D++K AFRR+A+  HPDV        +F  + EAY++
Sbjct: 1   MSMTAGAKRDYYEVLGVSRSATPDEIKKAFRRLARQYHPDVNKSPDAEAKFKEINEAYEV 60

Query: 429 LSDPAARATYDR 464
           LSD   RA YDR
Sbjct: 61  LSDEQKRAMYDR 72

>ref|ZP_00031960.1| COG2214: DnaJ-class molecular chaperone [Burkholderia fungorum]
          Length = 329

 Score = 70.9 bits (172), Expect = 2e-11
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +3

Query: 282 YEVLGLSRTASADDVKSAFRRMAKAMHPDVAGRAYLPEEFLALKEAYDMLSDPAARATYD 461
           YE+LGL R+AS DD+K ++R++A+  HPDV+  A   E F  L EAY++L DP  RA YD
Sbjct: 21  YEILGLERSASQDDIKRSYRKLARKYHPDVSKHADAEERFKELGEAYEVLKDPEKRAAYD 80

Query: 462 R 464
           R
Sbjct: 81  R 81

>sp|Q9LCQ4|DNAJ_BRECH Chaperone protein dnaJ gi|6855462|dbj|BAA90474.1| DnaJ
           [Brevibacillus choshinensis]
          Length = 375

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 33/65 (50%), Positives = 46/65 (70%)
 Frame = +3

Query: 270 RRCPYEVLGLSRTASADDVKSAFRRMAKAMHPDVAGRAYLPEEFLALKEAYDMLSDPAAR 449
           +R  YEVLG+ + A AD++K A+R++A+  HPDV   A   E+F  +KEAYD+LS+P  R
Sbjct: 2   KRDYYEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKR 61

Query: 450 ATYDR 464
           A YDR
Sbjct: 62  AQYDR 66



EST assemble image


clone accession position
1 LCL084h07_r AV630831 1 513
2 LCL015h03_r AV626812 223 639
3 LCL095a05_r AV631494 250 431




Chlamydomonas reinhardtii
Kazusa DNA Research Institute