KCC003107A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003107A_C01 KCC003107A_c01
CTCACACACGCACAATTCTTTACTCTGCTGCCTGTCCACTCGCCTGTCCAACTACTACCA
GTCGGGGATTTCTTCTCCTGAAGGTCTAACCATGGCCGCGGGATCTGTTGGCGTCTTCGC
CACCGATGAGAAGATTGGCAGCCTGCTGGACCAGTCCATCACGCGCCACTTTCTGTCGAC
TGTGACCGACCAGCAGGGCAAGATCTGTGCCGAGTATGTGTGGATCGGCGGCTCCATGCA
CGACGTGCGCTCCAAGTCGCGCACCCTGTCCACCATCCCCACGAAGCCCGAGGACCTGCC
CCACTGGAACTACGACGGCTCCTCCACCGGCCAGGCCCCCGGCCACGACTCAGAGGTCTA
TCTCATTCCCCGCTCCATCTTCAAGGACCCCTTCCGCGGCGGCGACAACATCCTGGTCAT
GTGCGACTGCTACGAGCCGCCCAAGGTCAACCCCGACGGCACCCTGGCCGCGCCCAAGCC
GATCCCCACGAACACCCGCTTTGCCTGCGCCGAGGTGATGGAGAAGGCCAAGAAGGAGGA
GCCCTGGTTCGGCATTGAGCAGGAGTACACGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003107A_C01 KCC003107A_c01
         (573 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q42688|GLN1_CHLRE Glutamine synthetase, cytosolic isozyme (Gl...   338  3e-92
emb|CAC39216.1| glutamine synthetase [Vitis vinifera]                 160  1e-38
dbj|BAA03431.1| glutamine synthetase [Zea mays]                       158  4e-38
sp|P38561|GLN3_MAIZE GLUTAMINE SYNTHETASE ROOT ISOZYME 3 (GLUTAM...   158  6e-38
dbj|BAA03430.1| glutamine synthetase [Zea mays]                       157  1e-37

>sp|Q42688|GLN1_CHLRE Glutamine synthetase, cytosolic isozyme (Glutamate--ammonia ligase)
           (GS1) gi|7437922|pir||T08088 glutamate-ammonia ligase
           (EC 6.3.1.2), cytosolic - Chlamydomonas reinhardtii
           gi|1353876|gb|AAB01817.1| glutamine synthetase
           [Chlamydomonas reinhardtii]
          Length = 382

 Score =  338 bits (867), Expect = 3e-92
 Identities = 160/160 (100%), Positives = 160/160 (100%)
 Frame = +2

Query: 92  MAAGSVGVFATDEKIGSLLDQSITRHFLSTVTDQQGKICAEYVWIGGSMHDVRSKSRTLS 271
           MAAGSVGVFATDEKIGSLLDQSITRHFLSTVTDQQGKICAEYVWIGGSMHDVRSKSRTLS
Sbjct: 1   MAAGSVGVFATDEKIGSLLDQSITRHFLSTVTDQQGKICAEYVWIGGSMHDVRSKSRTLS 60

Query: 272 TIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVN 451
           TIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVN
Sbjct: 61  TIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVN 120

Query: 452 PDGTLAAPKPIPTNTRFACAEVMEKAKKEEPWFGIEQEYT 571
           PDGTLAAPKPIPTNTRFACAEVMEKAKKEEPWFGIEQEYT
Sbjct: 121 PDGTLAAPKPIPTNTRFACAEVMEKAKKEEPWFGIEQEYT 160

>emb|CAC39216.1| glutamine synthetase [Vitis vinifera]
          Length = 356

 Score =  160 bits (405), Expect = 1e-38
 Identities = 80/132 (60%), Positives = 93/132 (69%), Gaps = 2/132 (1%)
 Frame = +2

Query: 182 VTDQQGKICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVY 361
           ++D   KI AEY+WIGGS +D+RSK+RTLS   T P  LP WNYDGSSTGQAPG DSEV 
Sbjct: 12  LSDSTEKIIAEYIWIGGSGNDLRSKARTLSGPVTGPAQLPKWNYDGSSTGQAPGEDSEVI 71

Query: 362 LIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVME--KAKK 535
           L P++IFKDPFRGGDNILVMCD Y P            +PIPTN RF  A++    +   
Sbjct: 72  LYPQAIFKDPFRGGDNILVMCDAYTP----------GGEPIPTNKRFNAAKIFSHPEVTA 121

Query: 536 EEPWFGIEQEYT 571
           EEPW+GIEQEYT
Sbjct: 122 EEPWYGIEQEYT 133

>dbj|BAA03431.1| glutamine synthetase [Zea mays]
          Length = 356

 Score =  158 bits (400), Expect = 4e-38
 Identities = 79/132 (59%), Positives = 93/132 (69%), Gaps = 2/132 (1%)
 Frame = +2

Query: 182 VTDQQGKICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVY 361
           ++D   KI AEY+WIGGS  D+RSK+RTLS   T P  LP WNYDGSSTGQAPG DSEV 
Sbjct: 12  LSDNTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVI 71

Query: 362 LIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVME--KAKK 535
           L P++IFKDPFR G+NILVMCDCY P          A +PIPTN R+  A++    +   
Sbjct: 72  LYPQAIFKDPFRRGNNILVMCDCYTP----------AGEPIPTNKRYNAAKIFSSPEVAA 121

Query: 536 EEPWFGIEQEYT 571
           EEPW+GIEQEYT
Sbjct: 122 EEPWYGIEQEYT 133

>sp|P38561|GLN3_MAIZE GLUTAMINE SYNTHETASE ROOT ISOZYME 3 (GLUTAMATE--AMMONIA LIGASE)
           (GS112) gi|481808|pir||S39479 glutamate-ammonia ligase
           (EC 6.3.1.2) 1-3, cytosolic - maize
           gi|434328|emb|CAA46721.1| glutamine synthetase [Zea
           mays]
          Length = 356

 Score =  158 bits (399), Expect = 6e-38
 Identities = 79/132 (59%), Positives = 93/132 (69%), Gaps = 2/132 (1%)
 Frame = +2

Query: 182 VTDQQGKICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVY 361
           ++D   KI AEY+WIGGS  D+RSK+RTLS   T P  LP WNYDGSSTGQAPG DSEV 
Sbjct: 12  LSDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVI 71

Query: 362 LIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVME--KAKK 535
           L P++IFKDPFR G+NILVMCDCY P          A +PIPTN R+  A++    +   
Sbjct: 72  LYPQAIFKDPFRRGNNILVMCDCYTP----------AGEPIPTNKRYNAAKIFSSPEVAA 121

Query: 536 EEPWFGIEQEYT 571
           EEPW+GIEQEYT
Sbjct: 122 EEPWYGIEQEYT 133

>dbj|BAA03430.1| glutamine synthetase [Zea mays]
          Length = 356

 Score =  157 bits (397), Expect = 1e-37
 Identities = 78/132 (59%), Positives = 93/132 (70%), Gaps = 2/132 (1%)
 Frame = +2

Query: 182 VTDQQGKICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVY 361
           ++D   KI AEY+WIGGS  D+RSK+RTL    T P  LP WNYDGSSTGQAPG DSEV 
Sbjct: 12  LSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVI 71

Query: 362 LIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVME--KAKK 535
           L P++IFKDPFR G+NILVMCDCY P          A +PIPTN R++ A++    +   
Sbjct: 72  LYPQAIFKDPFRRGNNILVMCDCYTP----------AGEPIPTNKRYSAAKIFSSPEVAA 121

Query: 536 EEPWFGIEQEYT 571
           EEPW+GIEQEYT
Sbjct: 122 EEPWYGIEQEYT 133



EST assemble image


clone accession position
1 MXL052c11_r BP096082 1 445
2 MXL011a04_r BP093616 1 395
3 MXL044b04_r BP095579 1 385
4 LCL037c02_r AV628131 1 181
5 MX214g08_r BP089842 3 404
6 MXL022h07_r BP094428 3 489
7 MX253d02_r BP092375 4 455
8 MXL096d08_r BP098621 5 461
9 MX249c06_r BP092063 19 565
10 MXL006g06_r BP093321 22 332
11 MXL070c07_r BP097110 39 405
12 LCL014f08_r AV626736 299 573




Chlamydomonas reinhardtii
Kazusa DNA Research Institute