Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003102A_C01 KCC003102A_c01
(553 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cerc... 158 5e-38
gb|AAG48836.1|AC084218_6 similar to Arabidopsis thaliana DNA-dir... 147 1e-34
pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) largest cha... 143 1e-33
gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.] 141 7e-33
ref|NP_195305.1| DNA-directed RNA polymerase (EC 2.7.7.6) II lar... 137 7e-32
>gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 158 bits (399), Expect = 5e-38
Identities = 79/182 (43%), Positives = 122/182 (66%)
Frame = +3
Query: 3 AMEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR 182
AMED++++Y TVRNS GD++QF YGEDGMD V IE Q + LK D A+ K Y++D +R
Sbjct: 778 AMEDVMIKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLKTYQLDVSR 837
Query: 183 DMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARL 362
D++ AE E L P A+ E+ Q+++D ++LR+++ G++ V++P+NL RL
Sbjct: 838 PEQLDFMDAEVREHLLRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRL 897
Query: 363 IWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSL 542
IWNAQ +F+ R + ++ ++VI V+ L ERL+VV G+D LS++AQ NAT +F +
Sbjct: 898 IWNAQKRFHV--DRFSKSNIEPQQVIADVKSLAERLIVVRGTDPLSLQAQTNATTLFKIM 955
Query: 543 VR 548
+R
Sbjct: 956 LR 957
>gb|AAG48836.1|AC084218_6 similar to Arabidopsis thaliana DNA-directed RNA polymerase (EC
2.7.7.6) II largest chain (JDMU1) [Oryza sativa]
Length = 1741
Score = 147 bits (370), Expect = 1e-34
Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 AMEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TT 179
AMED++V+Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK A+ D +R +
Sbjct: 810 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDNVFRYELDD 869
Query: 180 RDMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLAR 359
+ P++LS + E L+T + E+ +++ D L E+ T GD +P+NL R
Sbjct: 870 ENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 929
Query: 360 LIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHS 539
LIWNAQ F RP + + E++ + +L ERL VV G D +S+EAQ+NAT+ F+
Sbjct: 930 LIWNAQKTFKIDLRRP--SDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNATLFFNI 987
Query: 540 LVR 548
L+R
Sbjct: 988 LLR 990
>pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform C)
- soybean (fragment) gi|18736|emb|CAA36736.1|
DNA-directed RNA polymerase [Glycine max]
Length = 977
Score = 143 bits (361), Expect = 1e-33
Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 AMEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TT 179
AMED++++Y GTVRNS GDV+QFLYGEDGMDA+ IE Q + LK + D+ +R +
Sbjct: 54 AMEDIMLKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDE 113
Query: 180 RDMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLAR 359
+ P+++ E E L+T E+ +++ D L E+ +NGD + +P+NL R
Sbjct: 114 ENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKR 173
Query: 360 LIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHS 539
LIWNAQ F RP + + E++ + +L ERL VV G D LS EAQ+NAT++F+
Sbjct: 174 LIWNAQKTFKVDFRRP--SDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNI 231
Query: 540 LVR 548
L+R
Sbjct: 232 LLR 234
>gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.]
Length = 613
Score = 141 bits (355), Expect = 7e-33
Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 AMEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTR 182
AMED++V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q +K + + D YR + +
Sbjct: 372 AMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKMNKSTFDATYRYEIDQ 431
Query: 183 -DMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLAR 359
D PD++ + + + Q M E+ Q+++D R L E+ GD +P+N+ R
Sbjct: 432 EDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKR 491
Query: 360 LIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHS 539
LIWNAQ F +P + + +V+ + +L ERL VV+G D +S EAQ+NAT+ F+
Sbjct: 492 LIWNAQKIFKIDLRKP--SDMNPMDVVDGMDKLQERLKVVVGDDHISREAQKNATLFFNC 549
Query: 540 LVR 548
L+R
Sbjct: 550 LLR 552
>ref|NP_195305.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana] gi|12644149|sp|P18616|RPB1_ARATH
DNA-directed RNA polymerase II largest subunit
gi|25288404|pir||G85422 hypothetical protein AT4g35800
[imported] - Arabidopsis thaliana
gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase
(EC 2.7.7.6) II largest chain [Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase
(EC 2.7.7.6) II largest chain [Arabidopsis thaliana]
Length = 1840
Score = 137 bits (346), Expect = 7e-32
Identities = 78/183 (42%), Positives = 112/183 (60%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 AMEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRID-TT 179
AMED++V+Y GTVRNS GDV+QFLYGEDGMDAV IE Q + LK ++ D+ ++ +
Sbjct: 864 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDD 923
Query: 180 RDMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLAR 359
+ P +LS E E L+ + E ++++ D L E+ TNGD +P+N+ R
Sbjct: 924 ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983
Query: 360 LIWNAQTKFNCKPHRPGWTGLQVKEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHS 539
IWNAQ F + + + E++ V +L ERL+VV G D LSVEAQ+NAT+ F+
Sbjct: 984 HIWNAQKTFKIDLRK--ISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNI 1041
Query: 540 LVR 548
L+R
Sbjct: 1042 LLR 1044
