Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003091A_C01 KCC003091A_c01
(239 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08839 polyprotein - marmoset hepatitis GB virus A gi|28285... 31 4.5
>pir||T08839 polyprotein - marmoset hepatitis GB virus A
gi|2828598|gb|AAC40501.1| polyprotein [Hepatitis GB
virus A]
Length = 2970
Score = 31.2 bits (69), Expect = 4.5
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 121 CIGGKRLQGAKGQV-RVGRWGKVA*VPVAWYG 29
C+ G+ L GA G V RVG G A V WYG
Sbjct: 605 CLSGQTLAGAAGDVWRVGNEGAQAVVKAGWYG 636
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,679,013
Number of Sequences: 1537769
Number of extensions: 4023492
Number of successful extensions: 8971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8970
length of database: 498,525,298
effective HSP length: 55
effective length of database: 413,948,003
effective search space used: 9934752072
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
