KCC003082A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003082A_C01 KCC003082A_c01
ctaCAGAACATCTTCAACTCAATCTCCAAGCACTCAAGCTACAAGAGCCGGTGTCGCATT
TGCAACATCTCAGGGGAGTTCGACTCCGTCACAACGAGCGTTGTTGCTGAACCAAGTTTG
CAACTATGATGCTGTCAGGCCGCACCTGCAACCATGCCTTCAGCACTCGTCAAATGAGCC
ACCAGCGCGGAGCGCTCGCGCTTCGATCAGCGCGGGTAGCTCAACGGCCGGTCACTTGCC
GTCGCGCACCGTTTGTGCCCAGCGCCGTCTTCCTACAGTCAGAGCCGGCACAAAAGACCG
CTTCCTCTGCCAACAACGGCGATGCCGCGCCCTCGGAGGCTCGCACCGTCCCGTCCGAGC
GCGCGCTGGCCATCTGGCGCTCCGCCGACGCCGTCTGCTTCGACGTAGACTGCACCATCA
CCATCAATGACGGCCTGGACCTGCTGGCCGAGTTCATGGGCGTCAAGGAGGAGGTTGAGG
AGCTCACCAACAAGGCCATGGACGGCACCATGTCTCTGACGCGCTCTCTGGAGGAGCGCC
TCAACCTGATCAACTGCTCGCCCGACGACATCCGCCGCTTCATCAAGGCCTACCCGCCCC
AGTCCCGCCTGGCGCCCGGCATCAAGGAGCTGATCAAGGCGCTCCAGAAGCGCGGTGTGG
CGGTGTACCTCATCAGCGGCGGCTTCCGCGAGCTGCTGCTGCCCATCGCGGCGCACCTGG
GCATCCCGAAGGACCGCGTCTTCGCCAACCGCATGCACTGGCAGTGGGACGACGAGACCG
GCATGCCCACCAAGCTGGTCGGCTTTGACACGTCCGAGCCCACGGCCCGCAACCAGGGCA
AGCCCGAGGCCATCGCGCGCATCCGCGAGAACAACCCCTACAACACCGTGGTCATGATCG
GCGACGGCATCACCGACCTGGAGGCGGTGCAGACCAGCGGCGGCGCCGACTTGTTCATCG
GCAGCGGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003082A_C01 KCC003082A_c01
         (971 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, ch...   183  4e-45
ref|NP_173299.1| 3-phosphoserine phosphatase (PSP) [Arabidopsis ...   183  4e-45
ref|XP_222105.2| similar to expressed sequence AI480570 [Rattus ...   162  8e-39
gb|AAD27569.1|AF114171_10 hypothetical protein [Sorghum bicolor]      160  3e-38
ref|NP_598661.1| phosphoserine phosphatase [Mus musculus] gi|128...   160  4e-38

>pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, chloroplast
           [validated] - Arabidopsis thaliana
           gi|3759177|dbj|BAA33806.1| 3-phosphoserine phosphatase
           [Arabidopsis thaliana] gi|3759179|dbj|BAA33807.1|
           3-phosphoserin phosphatase [Arabidopsis thaliana]
          Length = 295

 Score =  183 bits (464), Expect = 4e-45
 Identities = 95/208 (45%), Positives = 138/208 (65%)
 Frame = +3

Query: 336 EARTVPSERALAIWRSADAVCFDVDCTITINDGLDLLAEFMGVKEEVEELTNKAMDGTMS 515
           E   VPS+  L +WRS +AVCFDVD T+ +++G+D LAEF G  + V E T +AM G++ 
Sbjct: 67  EGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVP 126

Query: 516 LTRSLEERLNLINCSPDDIRRFIKAYPPQSRLAPGIKELIKALQKRGVAVYLISGGFREL 695
              +L  RL+L   S   +  ++   PP  RL+PGI+EL+K L+   + VYLISGGFR++
Sbjct: 127 FEEALAARLSLFKPSLSKVEEYLDKRPP--RLSPGIEELVKKLRANNIDVYLISGGFRQM 184

Query: 696 LLPIAAHLGIPKDRVFANRMHWQWDDETGMPTKLVGFDTSEPTARNQGKPEAIARIRENN 875
           + P+A+ LGIP++ +FAN + +      G   + +GFD +EPT+R+ GK +A+ +IR+  
Sbjct: 185 INPVASILGIPRENIFANNLLF------GNSGEFLGFDENEPTSRSGGKAKAVQQIRKGR 238

Query: 876 PYNTVVMIGDGITDLEAVQTSGGADLFI 959
            Y T+ MIGDG TDLEA +  GGADLFI
Sbjct: 239 LYKTMAMIGDGATDLEA-RKPGGADLFI 265

>ref|NP_173299.1| 3-phosphoserine phosphatase (PSP) [Arabidopsis thaliana]
           gi|25402864|pir||B86320 3-phosphoserine phosphatase
           [imported] - Arabidopsis thaliana
           gi|9795592|gb|AAF98410.1|AC026238_2 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|17529132|gb|AAL38792.1| putative 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|20465705|gb|AAM20321.1| putative 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|21592986|gb|AAM64935.1| 3-phosphoserine phosphatase
           [Arabidopsis thaliana]
          Length = 295

 Score =  183 bits (464), Expect = 4e-45
 Identities = 95/208 (45%), Positives = 138/208 (65%)
 Frame = +3

Query: 336 EARTVPSERALAIWRSADAVCFDVDCTITINDGLDLLAEFMGVKEEVEELTNKAMDGTMS 515
           E   VPS+  L +WRS +AVCFDVD T+ +++G+D LAEF G  + V E T +AM G++ 
Sbjct: 67  EGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVP 126

Query: 516 LTRSLEERLNLINCSPDDIRRFIKAYPPQSRLAPGIKELIKALQKRGVAVYLISGGFREL 695
              +L  RL+L   S   +  ++   PP  RL+PGI+EL+K L+   + VYLISGGFR++
Sbjct: 127 FEEALAARLSLFKPSLSKVEEYLDKRPP--RLSPGIEELVKKLRANNIDVYLISGGFRQM 184

Query: 696 LLPIAAHLGIPKDRVFANRMHWQWDDETGMPTKLVGFDTSEPTARNQGKPEAIARIRENN 875
           + P+A+ LGIP++ +FAN + +      G   + +GFD +EPT+R+ GK +A+ +IR+  
Sbjct: 185 INPVASILGIPRENIFANNLLF------GNSGEFLGFDENEPTSRSGGKAKAVQQIRKGR 238

Query: 876 PYNTVVMIGDGITDLEAVQTSGGADLFI 959
            Y T+ MIGDG TDLEA +  GGADLFI
Sbjct: 239 LYKTMAMIGDGATDLEA-RKPGGADLFI 265

>ref|XP_222105.2| similar to expressed sequence AI480570 [Rattus norvegicus]
          Length = 225

 Score =  162 bits (410), Expect = 8e-39
 Identities = 89/196 (45%), Positives = 123/196 (62%)
 Frame = +3

Query: 381 SADAVCFDVDCTITINDGLDLLAEFMGVKEEVEELTNKAMDGTMSLTRSLEERLNLINCS 560
           SADAVCFDVD T+   +G+D LA+F GV+  V E+T +AM G +    +L ERL LI  S
Sbjct: 13  SADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTERLALIQPS 72

Query: 561 PDDIRRFIKAYPPQSRLAPGIKELIKALQKRGVAVYLISGGFRELLLPIAAHLGIPKDRV 740
            D ++R +  +PP   L PGI+EL+  LQ+R V V+LISGGFR ++  +AA L IP   V
Sbjct: 73  RDQVQRLLAEHPP--HLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNIPTTNV 130

Query: 741 FANRMHWQWDDETGMPTKLVGFDTSEPTARNQGKPEAIARIRENNPYNTVVMIGDGITDL 920
           FANR+ + ++ E        GFD ++PTA + GK + I  ++E   +  ++MIGDG TD+
Sbjct: 131 FANRLKFYFNGE------YAGFDETQPTAESGGKGKVIGFLKEKFHFKKIIMIGDGATDM 184

Query: 921 EAVQTSGGADLFIGSG 968
           EA      AD FIG G
Sbjct: 185 EACPP---ADAFIGFG 197

>gb|AAD27569.1|AF114171_10 hypothetical protein [Sorghum bicolor]
          Length = 236

 Score =  160 bits (405), Expect = 3e-38
 Identities = 89/212 (41%), Positives = 133/212 (61%), Gaps = 13/212 (6%)
 Frame = +3

Query: 363 ALAIWRSADAVCFDVDCTITINDGLDLLAEFMGVKEEVEELTNKAMDGTMSLTRSLEERL 542
           A+   R+ADAVCFDVD T+ +++G+D LA+F G  + V E T KAM GT+    +L  RL
Sbjct: 4   AIETLRNADAVCFDVDSTVILDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEALAARL 63

Query: 543 NLINCSPDDIRRFIKAYPPQSRLAPGIKELIKALQKRGVAVYLISGGFRELLLPIAAHLG 722
           +LI  S   +   ++  PP  R++PG+ +L+K L+   + V+L+SGGFR+++ P+A  LG
Sbjct: 64  SLIKPSLSQVEECLEKRPP--RISPGMADLVKKLKSNNIDVFLVSGGFRQMIKPVAFQLG 121

Query: 723 IPKDRVFANRMHWQWDDETGMPTKLVGFDTSEPTARNQGKPEAIARIR------------ 866
           IP + + AN++ +      G   +  GFD +EPT+R+ GK +A+ +I+            
Sbjct: 122 IPPENITANQLLF------GTSGEYAGFDPTEPTSRSGGKAKAVQKIKQLFTTSALTFVS 175

Query: 867 -ENNPYNTVVMIGDGITDLEAVQTSGGADLFI 959
            +++ Y TVVMIGDG TDLEA Q  GGADLFI
Sbjct: 176 VQDHGYKTVVMIGDGATDLEARQ-PGGADLFI 206

>ref|NP_598661.1| phosphoserine phosphatase [Mus musculus] gi|12805547|gb|AAH02251.1|
           Psph protein [Mus musculus] gi|26353984|dbj|BAC40622.1|
           unnamed protein product [Mus musculus]
          Length = 225

 Score =  160 bits (404), Expect = 4e-38
 Identities = 88/196 (44%), Positives = 122/196 (61%)
 Frame = +3

Query: 381 SADAVCFDVDCTITINDGLDLLAEFMGVKEEVEELTNKAMDGTMSLTRSLEERLNLINCS 560
           SADAVCFDVD T+   +G+D LA+F GV+  V E+T +AM G +    +L +RL LI  S
Sbjct: 13  SADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTQRLALIQPS 72

Query: 561 PDDIRRFIKAYPPQSRLAPGIKELIKALQKRGVAVYLISGGFRELLLPIAAHLGIPKDRV 740
            D ++R +  +PP   L PGI+EL+  LQ+R V V+LISGGFR ++  +AA L IP   V
Sbjct: 73  RDQVQRLLAEHPP--HLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNIPTTNV 130

Query: 741 FANRMHWQWDDETGMPTKLVGFDTSEPTARNQGKPEAIARIRENNPYNTVVMIGDGITDL 920
           FANR+ + ++ E        GFD  +PTA + GK + I  ++E   +  ++MIGDG TD+
Sbjct: 131 FANRLKFYFNGE------YAGFDEMQPTAESGGKGKVIRFLKEKFHFKKIIMIGDGATDM 184

Query: 921 EAVQTSGGADLFIGSG 968
           EA      AD FIG G
Sbjct: 185 EACPP---ADAFIGFG 197



EST assemble image


clone accession position
1 LCL042f09_r AV628488 1 526
2 LCL036a02_r AV628050 4 524
3 LCL077d10_r AV630333 4 524
4 LCL057b03_r AV629350 4 485
5 LCL046b06_r AV628719 4 512
6 MXL036c08_r BP095126 6 397
7 MXL078a03_r BP097576 13 377
8 MXL048d12_r BP095859 37 432
9 LCL010c06_r AV626506 289 791
10 MXL100a12_r BP098844 577 971




Chlamydomonas reinhardtii
Kazusa DNA Research Institute