Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003079A_C01 KCC003079A_c01
(383 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC92430.1| hypothetical protein [Oryza sativa (japonica cul... 53 9e-07
dbj|BAB92818.1| P0551A11.10 [Oryza sativa (japonica cultivar-gro... 47 7e-05
gb|AAL78894.1|AF435465_1 centromeric histone Cid [Drosophila pse... 47 7e-05
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 47 9e-05
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty ... 47 9e-05
>dbj|BAC92430.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 160
Score = 53.1 bits (126), Expect = 9e-07
Identities = 42/118 (35%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Frame = -2
Query: 358 ARRVARPLRRDRAGGGRRCWRRDGGGCGR----IVLGPGDWQRGLLDADAQHGGDVGVR- 194
A ARP D G G WRR GG G G G W GG VR
Sbjct: 42 AAAAARP--PDSVGAGGEAWRRQAGGGGSGGPAARSGRGGW-----------GGAAAVRP 88
Query: 193 -DAVAAVGAAQLQVGDGVADGHLPHAHLDALEGAHEQPRAPPPSPAHCRPPSSPPPAP 23
D G A G G P A +A E A Q R+PPP P PP++PPP P
Sbjct: 89 PDPAETRGGAVADNGSGAVARWRPTAGGEAAE-ARRQQRSPPPPPLPATPPAAPPPPP 145
>dbj|BAB92818.1| P0551A11.10 [Oryza sativa (japonica cultivar-group)]
gi|21328112|dbj|BAC00693.1| OJ1116_C07.10 [Oryza sativa
(japonica cultivar-group)]
Length = 273
Score = 47.0 bits (110), Expect = 7e-05
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Frame = -2
Query: 334 RRDRAGGGRRCWRRDGGGCGRIVLGPGDWQRGLLDADAQHGGDVGVRDAVAAVGAAQLQV 155
+R + GGRR R GG G + P W G+ DA A+ R+ G ++Q
Sbjct: 91 QRRKRKGGRRRRREVAGGGGAAAVAPM-WPGGIADAGARRWSSS--REVSPCAGDVKMQR 147
Query: 154 GDGVADGH-LPHAHLDALEGAHE-----QPR-APPPSPAHCRPPSSPPPAPP 20
DGH L + L+G H+ PR AP P+P H + PPPA P
Sbjct: 148 VRVFEDGHELGFSQHMPLDGVHQLVLDHMPRPAPGPAPPHSHARAEPPPAAP 199
>gb|AAL78894.1|AF435465_1 centromeric histone Cid [Drosophila pseudoananassae]
Length = 283
Score = 47.0 bits (110), Expect = 7e-05
Identities = 28/87 (32%), Positives = 40/87 (45%)
Frame = +3
Query: 96 APSRASRCACGRCPSATPSPTWSCAAPTAATASRTPTSPPCWASASSKPRCQSPGPRTMR 275
+PS SR A GR + +P + + +P T +TP P S +P QSP R
Sbjct: 97 SPSTRSRTAQGRMAAQSPQVSSAAQSPRRRTGPQTPQRRPTAQSPQRRPAAQSPQRRA-- 154
Query: 276 PHPPPSRRQHLRPPPARSRRSGLATRR 356
P P RR +PP ++ SG R+
Sbjct: 155 PAQSPQRRPATQPPQRSAQTSGAGRRK 181
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 46.6 bits (109), Expect = 9e-05
Identities = 31/86 (36%), Positives = 36/86 (41%)
Frame = +3
Query: 81 RGCSWAPSRASRCACGRCPSATPSPTWSCAAPTAATASRTPTSPPCWASASSKPRCQSPG 260
R S P+R R P P P +PT RTP+ PP S S + R P
Sbjct: 596 RSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPR-RYSPPI 654
Query: 261 PRTMRPHPPPSRRQHLRPPPARSRRS 338
R P PPP RR PPP + R S
Sbjct: 655 QRRYSPSPPPKRRTASPPPPPKRRAS 680
Score = 39.3 bits (90), Expect = 0.014
Identities = 25/73 (34%), Positives = 31/73 (42%)
Frame = +3
Query: 138 SATPSPTWSCAAPTAATASRTPTSPPCWASASSKPRCQSPGPRTMRPHPPPSRRQHLRPP 317
SA+PSP + R+P+ PP R +SP P P PPP RR+ P
Sbjct: 577 SASPSPRKRQKETSPRRRRRSPSPPPA-------RRRRSPSPAPPPPPPPPPRRRRSPTP 629
Query: 318 PARSRRSGLATRR 356
P R R RR
Sbjct: 630 PPRRRTPSPPPRR 642
Score = 33.5 bits (75), Expect = 0.75
Identities = 24/62 (38%), Positives = 28/62 (44%), Gaps = 10/62 (16%)
Frame = +3
Query: 207 SPPCWASASSKPRCQSPGPRTMR--PHPPPSRRQHL--------RPPPARSRRSGLATRR 356
SP AS S + R + PR R P PPP+RR+ PPP R RRS R
Sbjct: 573 SPSRSASPSPRKRQKETSPRRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPR 632
Query: 357 AR 362
R
Sbjct: 633 RR 634
Score = 33.1 bits (74), Expect = 0.98
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +3
Query: 186 TASRTPTSPPCWASASSKPRCQSPGPR-TMRPHPPPSRRQHLR--PPPARSRRSGLATRR 356
T SR+P+ S+ R SP R + R P P RR R PPP R RRS RR
Sbjct: 345 TRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRR 404
Query: 357 ARHRGAHSS 383
R A S
Sbjct: 405 RRRSSASLS 413
Score = 30.0 bits (66), Expect = 8.3
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 96 APSRASRCACGRCPSATPSPTWSCAAPTAATASRTPTSPPCWASASSKPR-CQSPGPRTM 272
+P R++R A P+ SP+ AP +T + PP AS+ P+ QSP P T
Sbjct: 719 SPGRSTREARSPQPNKRHSPSPRPRAP------QTSSPPPVRRGASASPQGRQSPSPSTR 772
Query: 273 RPHPPPSRRQHLRPPPARSRRSGLATRRARHRGAHS 380
P RR P P + +++ + ++ R + S
Sbjct: 773 -----PIRRVSRTPEPKKIKKAASPSPQSVRRVSSS 803
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines 101-l;
Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
gi|3005587|gb|AAC09321.1| Ser/Arg-related nuclear matrix
protein [Homo sapiens]
gi|33150824|gb|AAP97290.1|AF419855_1 Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 46.6 bits (109), Expect = 9e-05
Identities = 30/78 (38%), Positives = 36/78 (45%), Gaps = 11/78 (14%)
Frame = +3
Query: 138 SATPSPTWSCAAPTAATASR---TPTSPPCWASASSKPRCQSPGPRTMRP--------HP 284
S +P PT +P+ A R TPT PP + S PR +SP PR P P
Sbjct: 547 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP 606
Query: 285 PPSRRQHLRPPPARSRRS 338
PP RR PPP + R S
Sbjct: 607 PPKRRTASPPPPPKRRAS 624
Score = 34.7 bits (78), Expect = 0.34
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Frame = +3
Query: 39 DDGGRQCAGDGGGARGCSWAPSRASRCACGRCPSATPSPTWSCAAPTAATASRTPTSPPC 218
D GG+ A D R ++ S G S+ R SP
Sbjct: 466 DKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSR 525
Query: 219 WASASSKPRCQSPGPRTMR---PHPPPSRRQHL---RPPPARSRRSGLATRR 356
AS S + R + PR R P PPP+RR+ PPP R R RR
Sbjct: 526 SASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR 577
Score = 34.3 bits (77), Expect = 0.44
Identities = 23/64 (35%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Frame = +3
Query: 138 SATPSPTWSCAAPTA-ATASRTPTSPPCWASASSKPRCQSPGPRTMRPHPPPSRRQHLRP 314
SA+PSP + R+P+ PP S P +P PR R PP RR+ P
Sbjct: 526 SASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSP---APPPRRRRTPTPPPRRRTPSP 582
Query: 315 PPAR 326
PP R
Sbjct: 583 PPRR 586
