KCC003077A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003077A_C01 KCC003077A_c01
ctggagcaggagcacaaggtgctcgaaggcatttacccgcgccacgtgatcgagtacctc
accctagagggccgcgagtcTGTGGGCGACGGCGGCGCAGGCACAGGCGCAGGCGGCCGA
AGTGGCAACGGCGGAGACCAGTGCTTGCTGTCGCTGCTGCCGGGCAATGTGGCGCGCATG
GCCTCACTGGCCACCTGGCACAGCGGGGTGACGGTGCTTTTTGCCGACATCGTGGGCTTC
ACCACCATGTGCACCGCCTGCACGCCGCTCGCCGTCATGGCATTCCTCAACCAGCTCTAC
AGCCGCCTGGATGCCATGATTGACATCTACAAGGTCTACAAGGTGCGTGCGGAATCTAGG
GATGCGGTGGGGTGCAGCCCAGAAGCAAAGCAAGAGCTGGAGCAGCAGGGGTGCAGCCTG
CAAATGCGCAGCCGGTAGCTCCTGTAGCGGGCACGCACAACCTTTCCCGCACTGGGCTCG
GCATTTTGCGATGGCAGGTGGAGACCATCGGCGACTGCTACATGGTGGCGGGCGGGCTGG
TGGCGCACGATGATGACGGCTACAAGTCCGTCATCTCTGGCGGCGAGGACCCGCTGCATG
CGGTGCGCGTCATGGAGTTTGCGAAGGTGCGTGCGTTAGCATATGGTGTAGATAGGCGCT
AGCTGATTGATTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003077A_C01 KCC003077A_c01
         (673 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_313852.1| ENSANGP00000003987 [Anopheles gambiae] gi|21297...    64  2e-09
dbj|BAB84824.1| soluble guanylate cyclase alpha2d [Rattus norveg...    63  3e-09
ref|NP_076446.1| soluble guanylyl cyclase alpha2 subunit [Rattus...    63  5e-09
ref|XP_346815.1| soluble guanylyl cyclase alpha2 subunit [Rattus...    63  5e-09
dbj|BAC44887.1| soluble guanylyl cyclase alpha 2 subunit E219G m...    63  5e-09

>ref|XP_313852.1| ENSANGP00000003987 [Anopheles gambiae] gi|21297032|gb|EAA09177.1|
           ENSANGP00000003987 [Anopheles gambiae str. PEST]
          Length = 546

 Score = 64.3 bits (155), Expect = 2e-09
 Identities = 33/81 (40%), Positives = 44/81 (53%), Gaps = 5/81 (6%)
 Frame = +1

Query: 118 RSGNGGDQCLLSLLPGNVARMASLAT-----WHSGVTVLFADIVGFTTMCTACTPLAVMA 282
           R     D  L  +LP  VA     A      ++S VT+ F+DIVGFT +   CTPL V++
Sbjct: 308 REKRKSDSLLFQMLPPTVATQLKQAQTVPAEYYSAVTIFFSDIVGFTEIAAECTPLEVVS 367

Query: 283 FLNQLYSRLDAMIDIYKVYKV 345
           FLN +Y   D  I+ Y VYK+
Sbjct: 368 FLNAIYRMFDERIECYDVYKI 388

>dbj|BAB84824.1| soluble guanylate cyclase alpha2d [Rattus norvegicus]
          Length = 220

 Score = 63.2 bits (152), Expect = 3e-09
 Identities = 32/73 (43%), Positives = 44/73 (59%), Gaps = 5/73 (6%)
 Frame = +1

Query: 145 LLSLLPGNVA-----RMASLATWHSGVTVLFADIVGFTTMCTACTPLAVMAFLNQLYSRL 309
           L S+ PG+VA     R    A     VT+LF+DIVGFT +C  CTP+ V++ LN+LY+R 
Sbjct: 107 LYSIFPGDVAQQLWQRQQVQARKFDDVTMLFSDIVGFTAICAQCTPMQVISMLNELYTRF 166

Query: 310 DAMIDIYKVYKVR 348
           D       +YK+R
Sbjct: 167 DHQCGFLDIYKMR 179

>ref|NP_076446.1| soluble guanylyl cyclase alpha2 subunit [Rattus norvegicus]
           gi|14916544|sp|Q9WVI4|CYG4_RAT Guanylate cyclase
           soluble, alpha-2 chain (GCS-alpha-2)
           gi|11528625|gb|AAD42949.2|AF109963_1 soluble guanylyl
           cyclase alpha2 subunit [Rattus norvegicus]
           gi|25006393|dbj|BAC24017.1| soluble guanlate cyclase
           alpha 2 subunit [Rattus norvegicus]
          Length = 730

 Score = 62.8 bits (151), Expect = 5e-09
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
 Frame = +1

Query: 145 LLSLLPGNVA-----RMASLATWHSGVTVLFADIVGFTTMCTACTPLAVMAFLNQLYSRL 309
           L S+ PG+VA     R    A     VT+LF+DIVGFT +C  CTP+ V++ LN+LY+R 
Sbjct: 492 LYSIFPGDVAQQLWQRQQVQARKFDDVTMLFSDIVGFTAICAQCTPMQVISMLNELYTRF 551

Query: 310 D---AMIDIYKV 336
           D     +DIYKV
Sbjct: 552 DHQCGFLDIYKV 563

>ref|XP_346815.1| soluble guanylyl cyclase alpha2 subunit [Rattus norvegicus]
          Length = 329

 Score = 62.8 bits (151), Expect = 5e-09
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
 Frame = +1

Query: 145 LLSLLPGNVA-----RMASLATWHSGVTVLFADIVGFTTMCTACTPLAVMAFLNQLYSRL 309
           L S+ PG+VA     R    A     VT+LF+DIVGFT +C  CTP+ V++ LN+LY+R 
Sbjct: 91  LYSIFPGDVAQQLWQRQQVQARKFDDVTMLFSDIVGFTAICAQCTPMQVISMLNELYTRF 150

Query: 310 D---AMIDIYKV 336
           D     +DIYKV
Sbjct: 151 DHQCGFLDIYKV 162

>dbj|BAC44887.1| soluble guanylyl cyclase alpha 2 subunit E219G mutant [Rattus
           norvegicus]
          Length = 743

 Score = 62.8 bits (151), Expect = 5e-09
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
 Frame = +1

Query: 145 LLSLLPGNVA-----RMASLATWHSGVTVLFADIVGFTTMCTACTPLAVMAFLNQLYSRL 309
           L S+ PG+VA     R    A     VT+LF+DIVGFT +C  CTP+ V++ LN+LY+R 
Sbjct: 492 LYSIFPGDVAQQLWQRQQVQARKFDDVTMLFSDIVGFTAICAQCTPMQVISMLNELYTRF 551

Query: 310 D---AMIDIYKV 336
           D     +DIYKV
Sbjct: 552 DHQCGFLDIYKV 563



EST assemble image


clone accession position
1 LCL009c09_r AV626451 1 524
2 MXL068g09_r BP097020 259 673




Chlamydomonas reinhardtii
Kazusa DNA Research Institute