Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003074A_C01 KCC003074A_c01
(508 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_077627.1| EsV-1-142 [Ectocarpus siliculosus virus] gi|676... 36 0.31
gb|AAD04721.1| determined by GENSCAN prediction and spliced EST;... 33 1.6
ref|XP_137008.1| similar to endogenous retroviral family W, env(... 33 2.7
ref|NP_044513.1| UL43 [Human herpesvirus 2] gi|1869866|emb|CAB06... 32 3.5
>ref|NP_077627.1| EsV-1-142 [Ectocarpus siliculosus virus]
gi|6760383|gb|AAF28323.1|AF204952_1 EsV-1-142
[Ectocarpus siliculosus virus]
Length = 445
Score = 35.8 bits (81), Expect = 0.31
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 105 QTLKRTDTGIL*SLAPDSSSTAFSCLSDLI*CMDVLPPPAAHQYKFTRLTHSSHTASSAP 284
QT R DT + S A D++ C SD+ + H + FT L S T+S P
Sbjct: 66 QTQARCDTAMSSSTATDANEQCAICRSDITGSCNKSTTSCGHSFHFTCLARSMRTSSICP 125
Query: 285 FC 290
C
Sbjct: 126 IC 127
>gb|AAD04721.1| determined by GENSCAN prediction and spliced EST; match to EST
R84329 (NID:942735) [Homo sapiens]
Length = 592
Score = 33.5 bits (75), Expect = 1.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 373 CG*WFWFRLQCSESVLGVCLNATNG 299
CG WFWFR + S LG+ LN G
Sbjct: 568 CGSWFWFRAEASVKALGLTLNVLFG 592
>ref|XP_137008.1| similar to endogenous retroviral family W, env(C7), member 1
(syncytin); envelope protein; syncytin [Homo sapiens]
[Mus musculus]
Length = 527
Score = 32.7 bits (73), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = +3
Query: 66 PCLVHVPCHAAPSQTLKRTDTGIL*SLA 149
PC H+PCH PS ++RT+ + +LA
Sbjct: 254 PCRFHIPCHPQPSDKIQRTNHSLKTTLA 281
>ref|NP_044513.1| UL43 [Human herpesvirus 2] gi|1869866|emb|CAB06729.1| UL43 [Human
herpesvirus 2]
Length = 414
Score = 32.3 bits (72), Expect = 3.5
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Frame = -3
Query: 143 ASKDTRVCAFQRLAWRGVA---WHVYQAGAPPCYTSAITPC 30
A TRVCA+ RL G A W + +AGAPP T C
Sbjct: 88 ARPPTRVCAWLRLVGGGAAVALWSLGEAGAPPGVPGPATQC 128
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,102,318
Number of Sequences: 1537769
Number of extensions: 11638062
Number of successful extensions: 32238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32178
length of database: 498,525,298
effective HSP length: 115
effective length of database: 321,681,863
effective search space used: 17049138739
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
