KCC003067A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003067A_C01 KCC003067A_c01
tcgcatctgtgcatctctgtgctgtataaaacaatacacatttctctaactGATTGCATA
ATAGGAACAAAGCGGGAGACGTCGAGCTCGCGTCTGAACAAACCTCTTTGTCCGCGACGT
CAGCAGCCATGGGGACGCCTCTTGAGCTTATCAAATATAATACTGACTCGGGCACGTTTG
ACATTGGCAAGGCTGCCCTGGACACGCTGCGCAAGGTCAAGGGACCAGTGGCGGTGGTGG
CCGTCTGCGGCCGAGCACGCCAGGGCAAGAGCTTTATTCTGAACCAGCTCCTGTTCAAGA
GCAGCGGGGGCGGCTTCCAGGTGGGCGCGACACACCGGCCCTGCACCAAGGGGCTCTGGA
TGTGGTCGTCACCGCAGCAGGTGACTGCTGCGGACGGCTCCAAGCACCACCTGGTGCTGC
TGGACACGGAGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003067A_C01 KCC003067A_c01
         (433 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199419.1| expressed protein [Arabidopsis thaliana] gi|975...   119  1e-26
ref|NP_171879.1| expressed protein [Arabidopsis thaliana] gi|254...    88  3e-17
gb|AAP44686.1| putative guanylate binding protein [Oryza sativa ...    74  4e-13
ref|NP_181418.1| guanylate binding protein -related [Arabidopsis...    67  4e-11
ref|XP_223172.2| similar to hypothetical protein E430029F06 [Rat...    67  7e-11

>ref|NP_199419.1| expressed protein [Arabidopsis thaliana] gi|9757727|dbj|BAB08252.1|
           contains similarity to guanylate binding
           protein~gene_id:MCL19.12 [Arabidopsis thaliana]
          Length = 1060

 Score =  119 bits (298), Expect = 1e-26
 Identities = 61/111 (54%), Positives = 84/111 (74%), Gaps = 1/111 (0%)
 Frame = +3

Query: 102 TSLSATSAAMGTPLEL-IKYNTDSGTFDIGKAALDTLRKVKGPVAVVAVCGRARQGKSFI 278
           TS +++SA  G P  + + Y  + G F +   A+ TL+ VK P+ VV+VCGRARQGKSFI
Sbjct: 27  TSPASSSAVTGPPRPIRLVYCDEKGKFRMDPEAVATLQLVKEPIGVVSVCGRARQGKSFI 86

Query: 279 LNQLLFKSSGGGFQVGATHRPCTKGLWMWSSPQQVTAADGSKHHLVLLDTE 431
           LNQLL +S+G  FQV +TH+PCTKGLW+WSSP + TA DG++++L+LLD+E
Sbjct: 87  LNQLLGRSNG--FQVASTHKPCTKGLWLWSSPIKRTALDGTEYNLLLLDSE 135

>ref|NP_171879.1| expressed protein [Arabidopsis thaliana] gi|25406745|pir||H86168
           hypothetical protein [imported] - Arabidopsis thaliana
           gi|4204314|gb|AAD10695.1| Hypothetical protein
           [Arabidopsis thaliana]
          Length = 991

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 46/100 (46%), Positives = 65/100 (65%)
 Frame = +3

Query: 132 GTPLELIKYNTDSGTFDIGKAALDTLRKVKGPVAVVAVCGRARQGKSFILNQLLFKSSGG 311
           G  ++L+ Y  ++G       A+  L+K+KGPVAVV++ G+A QGKSFI NQLL +S   
Sbjct: 9   GRAVQLV-YVDENGKLKTDPEAIGALQKLKGPVAVVSLFGKALQGKSFIWNQLLSRSI-- 65

Query: 312 GFQVGATHRPCTKGLWMWSSPQQVTAADGSKHHLVLLDTE 431
           GF+V   HRPC   +WMW  P +  + DG+++ LVLLD E
Sbjct: 66  GFEVQTLHRPCNGDIWMWIEPVKRISEDGTEYSLVLLDVE 105

>gb|AAP44686.1| putative guanylate binding protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 605

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 38/83 (45%), Positives = 53/83 (63%)
 Frame = +3

Query: 183 IGKAALDTLRKVKGPVAVVAVCGRARQGKSFILNQLLFKSSGGGFQVGATHRPCTKGLWM 362
           + +  LD +R+++ P+AVV V G  R GKSF+LNQLL  S   GF VG      TKG+W+
Sbjct: 47  LSQQGLDAIRRIETPIAVVGVIGPYRSGKSFLLNQLLSLSCEKGFGVGHMRDTKTKGIWI 106

Query: 363 WSSPQQVTAADGSKHHLVLLDTE 431
           W +P ++   DGSK  ++ LDTE
Sbjct: 107 WGTPVEMD-IDGSKVSVLYLDTE 128

>ref|NP_181418.1| guanylate binding protein -related [Arabidopsis thaliana]
           gi|25408623|pir||A84810 probable guanylate binding
           protein [imported] - Arabidopsis thaliana
           gi|20198108|gb|AAM15401.1| putative guanylate binding
           protein [Arabidopsis thaliana]
          Length = 217

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 34/83 (40%), Positives = 50/83 (59%)
 Frame = +3

Query: 183 IGKAALDTLRKVKGPVAVVAVCGRARQGKSFILNQLLFKSSGGGFQVGATHRPCTKGLWM 362
           + +  L+ + ++  P++ VAV G  R GKSF+LNQLL  S   GF VG      TKG+W+
Sbjct: 31  LSREGLEAISRITTPISAVAVIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTKGIWV 90

Query: 363 WSSPQQVTAADGSKHHLVLLDTE 431
           W +P ++   DG K  ++ LDTE
Sbjct: 91  WGTPLEL-EIDGVKTSVIYLDTE 112

>ref|XP_223172.2| similar to hypothetical protein E430029F06 [Rattus norvegicus]
          Length = 1249

 Score = 66.6 bits (161), Expect = 7e-11
 Identities = 40/110 (36%), Positives = 59/110 (53%)
 Frame = +3

Query: 102 TSLSATSAAMGTPLELIKYNTDSGTFDIGKAALDTLRKVKGPVAVVAVCGRARQGKSFIL 281
           T L A +     P+ L++ + +     + + A++ L K+  PV VVA+ G  R GKS+++
Sbjct: 589 TQLVAVTQPQMAPICLVENHNER--LSVNQKAIEILDKISQPVVVVAIVGLYRTGKSYLM 646

Query: 282 NQLLFKSSGGGFQVGATHRPCTKGLWMWSSPQQVTAADGSKHHLVLLDTE 431
           N L       GF +G+T +  TKG+WMW  P         KH LVLLDTE
Sbjct: 647 NCL--AGQNHGFPLGSTVQSQTKGIWMWCVPHPTK----PKHTLVLLDTE 690



EST assemble image


clone accession position
1 LCL090g09_r AV631245 1 273
2 LCL070d02_r AV629978 52 433
3 LCL013d12_r AV626672 64 232
4 LCL007c10_r AV626341 66 347




Chlamydomonas reinhardtii
Kazusa DNA Research Institute