KCC003063A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC003063A_C01 KCC003063A_c01
atacagTGATAGTTAAATGTAGATTGGTCAGGACAACCTATATTTGCAGCGCCTTAGAGA
CCCGCTTGACATAAACCAGAGAACCCTTGCGACCAAGGCGTTTGGCAAACGTGACGCTCC
CTGGCCCGGACTGTCCGCTTTCGGAAACCTCTCTTGAGCTCTTAGTTGCGTCAGCCTCGA
GCCCGGGGGCGCCAGGGCGAGCGGGCTGGGCCCCGGACTTGGCGCCGCAGCTGACAGATG
GCGGACCGCAAGCCTATCGAGCTGGCAGAAGGATGGAGCTTTATGGAGGTGGGGCATTAG
CATGTGCAGCAGAGGAGCTTGGGCGGGATCTGCATCTGCATTTCCCGGCTCACCTCGGTC
ACGTCTTGGCCCAAGCAGAAAGGCATCCAGAAGCTCATCCGCTTGCTGGAGGGAGAGCCA
GAGGACCAATTTAACGCGGAGCAGTATATGCACCTGTACACGACTATCTACAACATGTGC
ACCCAGAAGCCGCCGCACGACTATTCGGAGCAGCTGTACAGCAAGTACAGGGACGCGTTC
AACAAGTACATAAACGA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003063A_C01 KCC003063A_c01
(557 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cult... 102 5e-21
gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa] 102 5e-21
emb|CAC87838.1| cullin 1D [Nicotiana tabacum] 100 1e-20
emb|CAC87836.1| cullin 1B [Nicotiana tabacum] 100 1e-20
pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thalia... 99 5e-20
>dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cultivar-group)]
gi|15528696|dbj|BAB64762.1| cullin-like protein [Oryza
sativa (japonica cultivar-group)]
gi|33243052|gb|AAQ01196.1| CUL1 [Oryza sativa (japonica
cultivar-group)]
Length = 732
Score = 102 bits (253), Expect = 5e-21
Identities = 51/103 (49%), Positives = 62/103 (59%)
Frame = +1
Query: 244 DRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGEPE 423
+RK I+L +GW FM QKGI KL +LEG+PE
Sbjct: 5 ERKTIDLEQGWEFM------------------------------QKGITKLKNILEGKPE 34
Query: 424 DQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYI 552
QF++E YM LYTTIYNMCTQKPPHDYS+QLY KYR++F +YI
Sbjct: 35 PQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYEKYRESFEEYI 77
>gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa]
Length = 750
Score = 102 bits (253), Expect = 5e-21
Identities = 51/103 (49%), Positives = 62/103 (59%)
Frame = +1
Query: 244 DRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGEPE 423
+RK I+L +GW FM QKGI KL +LEG+PE
Sbjct: 5 ERKTIDLEQGWEFM------------------------------QKGITKLKNILEGKPE 34
Query: 424 DQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYI 552
QF++E YM LYTTIYNMCTQKPPHDYS+QLY KYR++F +YI
Sbjct: 35 PQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYEKYRESFEEYI 77
>emb|CAC87838.1| cullin 1D [Nicotiana tabacum]
Length = 224
Score = 100 bits (250), Expect = 1e-20
Identities = 52/106 (49%), Positives = 64/106 (60%)
Frame = +1
Query: 238 MADRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGE 417
M+ K IEL EGW FM QKG+ KL ++LEG+
Sbjct: 3 MSQMKIIELEEGWEFM------------------------------QKGVTKLKKILEGQ 32
Query: 418 PEDQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYIN 555
+D FN+E+YM LYTTIYNMCTQKPPHDYS+QLY KY++AF +YIN
Sbjct: 33 -QDSFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYIN 77
>emb|CAC87836.1| cullin 1B [Nicotiana tabacum]
Length = 739
Score = 100 bits (250), Expect = 1e-20
Identities = 52/106 (49%), Positives = 64/106 (60%)
Frame = +1
Query: 238 MADRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGE 417
M+ K IEL EGW FM QKG+ KL ++LEG+
Sbjct: 3 MSQMKIIELEEGWEFM------------------------------QKGVTKLKKILEGQ 32
Query: 418 PEDQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYIN 555
+D FN+E+YM LYTTIYNMCTQKPPHDYS+QLY KY++AF +YIN
Sbjct: 33 -QDSFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYIN 77
>pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thaliana
gi|2281115|gb|AAC78267.1|AAC78267 putative cullin-like 1
protein [Arabidopsis thaliana]
gi|7269017|emb|CAB80750.1| putative cullin-like 1
protein [Arabidopsis thaliana]
Length = 676
Score = 98.6 bits (244), Expect = 5e-20
Identities = 51/104 (49%), Positives = 61/104 (58%)
Frame = +1
Query: 244 DRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGEPE 423
+RK I+L +GW +M Q GI KL R+LEG E
Sbjct: 2 ERKTIDLEQGWDYM------------------------------QTGITKLKRILEGLNE 31
Query: 424 DQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYIN 555
F++EQYM LYTTIYNMCTQKPPHDYS+QLY KYR+AF +YIN
Sbjct: 32 PAFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYIN 75
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
LCL077f10_r |
AV630351 |
1 |
487 |
2 |
LCL032c09_r |
AV627805 |
27 |
557 |
3 |
LCL006b09_r |
AV626299 |
28 |
340 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute