KCC003059A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003059A_C01 KCC003059A_c01
gccagtgtgactattacactgtagtatctgtgtaaacaaggcccgagcagggcgtgtcta
gacaagactcttggagcagcAGGAGATCAACACACATCTCGCGCAGTCGGTTGGGTCGAA
ATGGACCGGAGGGCCATCGCGCTGCTGCTGGTGGCTGCAGTTGCGCTCTGCGCTCTGCCA
GCCATCCGCGCTGACTCAGCCGTTGATGCGACGGCTGCGCCTAAGGTCGATAATGGTGTT
TCTTCTGGCCACGCGACTGCCACGGACGCCACCTCGATTCACAGGGAGAAGGAGGCGATG
TCCAAGCAGCGCGTGCGCGACAGCGGCGAGCAATTTGCCTTCCAGGCCGAGGTGACTCGC
CTCATGGACATCATCATTCACTCGCTCTACTCCAACAAGGACATTTTCCTGCGCGAGCTC
ATCTCCAACGCCAGCGACGCGCTCGACAAGATCCGCTTCCTGTCCCTCACGGACAAGTCG
ATCCTGGGCGACGGCGACACCTCCAACCTGGAGATCAAGATCTGGCTGGATCCGGAGTCC
AAGGTGCTGTACATCCGCGACCGCGGTATCGGCATGACCAAGGACGACCTGATTAAGAAC
CTGGGCACCATTGCCAAGTCGGGCACCTCGGCCTTCCTGGAGCAGATGCAGAAGGGTGGC
GACATGAACCTGATCGGCCAGTTTGGTGTGGGTTTCTACTCGGTGTACCTGGTGGCCGAC
TACGTGGAGGTCGTGTCCAAGCACAACGACGACGCCCAGTACATCTGGTCGAGCACCGAC
GACGGCAGCTTCGCCATCAGCGAGGACACCGAGAACGAGCCTCTGGGCCGCGGCACCCTG
ATCAAGATCCACCTGAAGGAGGAGGCGCAGGAGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003059A_C01 KCC003059A_c01
         (875 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP94 HOMOLO...   325  5e-88
dbj|BAB86368.1| SHEPHERD [Arabidopsis thaliana]                       324  1e-87
gb|AAL79732.1|AC091774_23 heat shock protein 90 [Oryza sativa]        323  3e-87
ref|NP_194150.1| shepherd (SHD) [Arabidopsis thaliana] gi|744189...   322  5e-87
gb|AAN34791.1| Grp94 [Xerophyta viscosa]                              322  5e-87

>sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP94 HOMOLOG) gi|485498|pir||S33533
           heat shock protein 90 homolog precursor - barley
           gi|22652|emb|CAA48143.1| GRP94 homologue [Hordeum
           vulgare]
          Length = 809

 Score =  325 bits (834), Expect = 5e-88
 Identities = 169/251 (67%), Positives = 206/251 (81%), Gaps = 6/251 (2%)
 Frame = +1

Query: 139 ALLLVAAVALCALPA----IRADSAVDATAA-PKVDNGVSS-GHATATDATSIHREKEAM 300
           ALLLV  +     PA    + A+ + D     PKV+  + +  H  +TD+  + RE E++
Sbjct: 9   ALLLVLLLTTLPDPAKKLQVNAEESSDEVGDFPKVEEKLGAVPHGLSTDSEVVQRESESI 68

Query: 301 SKQRVRDSGEQFAFQAEVTRLMDIIIHSLYSNKDIFLRELISNASDALDKIRFLSLTDKS 480
           S++ +R+S E+F FQAEV+RLMDIII+SLYSNKDIFLRELISNASDALDKIRFL+LTDK 
Sbjct: 69  SRKTLRNSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKE 128

Query: 481 ILGDGDTSNLEIKIWLDPESKVLYIRDRGIGMTKDDLIKNLGTIAKSGTSAFLEQMQKGG 660
           ++G+GDT+ LEI+I LD E+K+L IRDRG+GMTK+DLIKNLGTIAKSGTSAF+E+MQ GG
Sbjct: 129 VMGEGDTAKLEIQIKLDKENKILSIRDRGVGMTKEDLIKNLGTIAKSGTSAFVEKMQTGG 188

Query: 661 DMNLIGQFGVGFYSVYLVADYVEVVSKHNDDAQYIWSSTDDGSFAISEDTENEPLGRGTL 840
           D+NLIGQFGVGFYSVYLVADYVEVVSKHNDD QY+W S  DGSFAISEDT NEPLGRGT 
Sbjct: 189 DLNLIGQFGVGFYSVYLVADYVEVVSKHNDDKQYVWESKADGSFAISEDTWNEPLGRGTE 248

Query: 841 IKIHLKEEAQE 873
           IK+HL++EA+E
Sbjct: 249 IKLHLRDEAKE 259

>dbj|BAB86368.1| SHEPHERD [Arabidopsis thaliana]
          Length = 823

 Score =  324 bits (830), Expect = 1e-87
 Identities = 160/233 (68%), Positives = 193/233 (82%)
 Frame = +1

Query: 175 LPAIRADSAVDATAAPKVDNGVSSGHATATDATSIHREKEAMSKQRVRDSGEQFAFQAEV 354
           L A   +S+ D T  PKV+  +      +TD+  +HRE E+MSK+ +R + E+F FQAEV
Sbjct: 26  LHANAEESSDDVTDPPKVEEKIGGHGGLSTDSDVVHRESESMSKKTLRSNAEKFEFQAEV 85

Query: 355 TRLMDIIIHSLYSNKDIFLRELISNASDALDKIRFLSLTDKSILGDGDTSNLEIKIWLDP 534
           +RLMDIII+SLYSNKDIFLRELISNASDALDKIRFL+LTDK +LG+GDT+ LEI+I LD 
Sbjct: 86  SRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLDK 145

Query: 535 ESKVLYIRDRGIGMTKDDLIKNLGTIAKSGTSAFLEQMQKGGDMNLIGQFGVGFYSVYLV 714
             K+L IRDRGIGMTK+DLIKNLGTIAKSGTSAF+E+MQ  GD+NLIGQFGVGFYS YLV
Sbjct: 146 AKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLNLIGQFGVGFYSAYLV 205

Query: 715 ADYVEVVSKHNDDAQYIWSSTDDGSFAISEDTENEPLGRGTLIKIHLKEEAQE 873
           ADY+EV+SKHNDD+QY+W S  DG FA+SEDT NEPLGRGT I++HL++EA E
Sbjct: 206 ADYIEVISKHNDDSQYVWESKADGKFAVSEDTWNEPLGRGTEIRLHLRDEAGE 258

>gb|AAL79732.1|AC091774_23 heat shock protein 90 [Oryza sativa]
          Length = 812

 Score =  323 bits (827), Expect = 3e-87
 Identities = 167/251 (66%), Positives = 202/251 (79%), Gaps = 8/251 (3%)
 Frame = +1

Query: 145 LLVAAVALCALP------AIRADSAVDATA-APKVDNGVSS-GHATATDATSIHREKEAM 300
           LL+  + L  LP       + AD + D     PKV+  +    H  +TD+  + RE E++
Sbjct: 10  LLLLLLLLTTLPDPAKKLQVNADDSTDELVDPPKVEEKIGGVPHGLSTDSEVVQREAESI 69

Query: 301 SKQRVRDSGEQFAFQAEVTRLMDIIIHSLYSNKDIFLRELISNASDALDKIRFLSLTDKS 480
           S++ +R S E+F FQAEV+RLMDIII+SLYSNKDIFLRELISNASDALDKIRFL+LTDK 
Sbjct: 70  SRKTLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKE 129

Query: 481 ILGDGDTSNLEIKIWLDPESKVLYIRDRGIGMTKDDLIKNLGTIAKSGTSAFLEQMQKGG 660
           +LG+GDT+ LEI+I LD E K+L IRDRGIGMTK+DLIKNLGTIAKSGTSAF+E+MQ GG
Sbjct: 130 VLGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTGG 189

Query: 661 DMNLIGQFGVGFYSVYLVADYVEVVSKHNDDAQYIWSSTDDGSFAISEDTENEPLGRGTL 840
           D+NLIGQFGVGFYSVYLVADYVEV+SKHNDD Q++W S  DGSFAISEDT NEPLGRGT 
Sbjct: 190 DLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGSFAISEDTWNEPLGRGTE 249

Query: 841 IKIHLKEEAQE 873
           I++HL++EA+E
Sbjct: 250 IRLHLRDEAKE 260

>ref|NP_194150.1| shepherd (SHD) [Arabidopsis thaliana] gi|7441896|pir||T09882 heat
           shock protein 90 homolog T22A6.20 - Arabidopsis thaliana
           gi|5051761|emb|CAB45054.1| HSP90-like protein
           [Arabidopsis thaliana] gi|7269269|emb|CAB79329.1|
           HSP90-like protein [Arabidopsis thaliana]
           gi|14532542|gb|AAK63999.1| AT4g24190/T22A6_20
           [Arabidopsis thaliana] gi|19570872|dbj|BAB86369.1|
           SHEPHERD [Arabidopsis thaliana]
           gi|28416485|gb|AAO42773.1| At4g24190/T22A6_20
           [Arabidopsis thaliana]
          Length = 823

 Score =  322 bits (825), Expect = 5e-87
 Identities = 159/233 (68%), Positives = 193/233 (82%)
 Frame = +1

Query: 175 LPAIRADSAVDATAAPKVDNGVSSGHATATDATSIHREKEAMSKQRVRDSGEQFAFQAEV 354
           L A   +S+ D T  PKV+  +      +TD+  +HRE E+MSK+ +R + E+F FQAEV
Sbjct: 26  LHANAEESSDDVTDPPKVEEKIGGHGGLSTDSDVVHRESESMSKKTLRSNAEKFEFQAEV 85

Query: 355 TRLMDIIIHSLYSNKDIFLRELISNASDALDKIRFLSLTDKSILGDGDTSNLEIKIWLDP 534
           +RLMDIII+SLYSNKDIFLRELISNASDALDKIRFL+LTDK +LG+GDT+ LEI+I LD 
Sbjct: 86  SRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLDK 145

Query: 535 ESKVLYIRDRGIGMTKDDLIKNLGTIAKSGTSAFLEQMQKGGDMNLIGQFGVGFYSVYLV 714
             K+L IRDRGIGMTK+DLIKNLGTIAKSGTSAF+E+MQ  GD+NLIGQFGVGFYS YLV
Sbjct: 146 AKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLNLIGQFGVGFYSAYLV 205

Query: 715 ADYVEVVSKHNDDAQYIWSSTDDGSFAISEDTENEPLGRGTLIKIHLKEEAQE 873
           ADY+EV+SKHNDD+QY+W S  +G FA+SEDT NEPLGRGT I++HL++EA E
Sbjct: 206 ADYIEVISKHNDDSQYVWESKANGKFAVSEDTWNEPLGRGTEIRLHLRDEAGE 258

>gb|AAN34791.1| Grp94 [Xerophyta viscosa]
          Length = 812

 Score =  322 bits (825), Expect = 5e-87
 Identities = 167/255 (65%), Positives = 203/255 (79%), Gaps = 10/255 (3%)
 Frame = +1

Query: 139 ALLLVAAVALCALP---------AIRADSAVDATAAPKVDNGVSSGHA-TATDATSIHRE 288
           AL+L+  ++L A+P         A  +  A +    PKV+  ++  H   +TDA    RE
Sbjct: 9   ALVLLLLISLSAIPDGGRKLHANAEESRDADELVDPPKVEEKIAGVHGGLSTDADVAKRE 68

Query: 289 KEAMSKQRVRDSGEQFAFQAEVTRLMDIIIHSLYSNKDIFLRELISNASDALDKIRFLSL 468
            E+MS++ +R + E+F FQAEV+RLMDIII+SLYSNKDIFLRELISNASDALDKIRFLSL
Sbjct: 69  AESMSRKNLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSL 128

Query: 469 TDKSILGDGDTSNLEIKIWLDPESKVLYIRDRGIGMTKDDLIKNLGTIAKSGTSAFLEQM 648
           TDK +LG+GD + LEI I LD E K+L IRDRGIGMTK+DLIKNLGTIAKSGTSAF+E+M
Sbjct: 129 TDKEVLGEGDNTKLEIMIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM 188

Query: 649 QKGGDMNLIGQFGVGFYSVYLVADYVEVVSKHNDDAQYIWSSTDDGSFAISEDTENEPLG 828
           Q GGD+NLIGQFGVGFYSVYLV+DYVEV+SKHNDD QY+W S  DG+FAISEDT NEPLG
Sbjct: 189 QTGGDLNLIGQFGVGFYSVYLVSDYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLG 248

Query: 829 RGTLIKIHLKEEAQE 873
           RGT I++HL++EA+E
Sbjct: 249 RGTEIRLHLRDEAKE 263



EST assemble image


clone accession position
1 LCL004h01_r AV626234 1 290
2 LCL084b05_r AV630775 83 538
3 LCL036f05_r AV628096 134 418
4 MXL063a12_r BP096687 430 875




Chlamydomonas reinhardtii
Kazusa DNA Research Institute