KCC003058A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003058A_C01 KCC003058A_c01
tcgggtggtagtgggggcagcggaggcggcaacggaggcggcagcggaggtgcgggcgga
agcggcggcaaCGCACCCGTACCTGCCAGCAGCTGGCGCGGGCACGCCCACGGGCCTGAT
CGGCGGCATCATCACTGAGTTTTGTCCGCAACGGCAGCCTGGGGCAGTACCTGCGCTCGC
TCAACGGCCGGCGGCTGTCGCTACGGCAGCGCGCCATGATTGCGCTTCAGGCTGCTCTCG
GCATGGCCTATCTGCACGAGCAGGCGCCGGCGGTGGTACACTTTGACCTGAAACCCGACA
ACCTGCTGGTGGACGGCGAGGGAGACAGCATGGTCATCAAGGTGGCGGACTTCGGGCTGT
CCAAGCACAAGCTGAGCAGCCACGTCAGCTGCCGCGACCTGCGGGGCACGCTGCCCTACA
TGGCGTACGAGCTGGTGTCCAACGCGGGCAATATCAGCGAAAAGGTGGACGTGTACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003058A_C01 KCC003058A_c01
         (477 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK52142.1|AC084380_15 putative protein kinase [Oryza sativa]       91  5e-18
ref|NP_181050.1| protein kinase family [Arabidopsis thaliana] gi...    88  6e-17
ref|NP_200569.1| protein kinase family [Arabidopsis thaliana] gi...    86  2e-16
ref|NP_173077.1| protein kinase family [Arabidopsis thaliana] gi...    84  1e-15
dbj|BAC22257.1| contains EST D23238(C2469)~kinase-like protein [...    82  2e-15

>gb|AAK52142.1|AC084380_15 putative protein kinase [Oryza sativa]
          Length = 780

 Score = 91.3 bits (225), Expect = 5e-18
 Identities = 60/119 (50%), Positives = 81/119 (67%), Gaps = 2/119 (1%)
 Frame = +3

Query: 126 ASSLSFVRNGSLGQYLRSLNGRRLSLRQRAMIALQAALGMAYLHEQAPAVVHFDLKPDNL 305
           A+   F+ NGSL + L   N + L  R+R M+A  AA+GM YLH +   +VHFDLK DNL
Sbjct: 637 ATVTEFMINGSLKKVLLHKN-KYLDWRKRIMVAKDAAIGMEYLHSK--DIVHFDLKCDNL 693

Query: 306 LVDGEGDSM-VIKVADFGLSKHKLSSHVSCRDLRGTLPYMAYELVSNAG-NISEKVDVY 476
           LV+ +  S  + KVADFGLSK K ++ VS   +RGTLP+MA EL++ +G  +SEK+DVY
Sbjct: 694 LVNIKDPSRPICKVADFGLSKMKQATLVS-GGMRGTLPWMAPELLTMSGTKVSEKIDVY 751

>ref|NP_181050.1| protein kinase family [Arabidopsis thaliana] gi|7488331|pir||T00486
            serine/threonine-specific protein kinase homolog F19I3.28
            - Arabidopsis thaliana gi|3033400|gb|AAC12844.1| putative
            protein kinase [Arabidopsis thaliana]
          Length = 1257

 Score = 87.8 bits (216), Expect = 6e-17
 Identities = 57/119 (47%), Positives = 81/119 (67%), Gaps = 2/119 (1%)
 Frame = +3

Query: 126  ASSLSFVRNGSLGQYLRSLNGRRLSLRQRAMIALQAALGMAYLHEQAPAVVHFDLKPDNL 305
            A+   ++ NGSL   L  L+ R L  R+R +IA+ AA GM YLH ++  +VHFDLK DNL
Sbjct: 1053 ATVTEYMVNGSLRHVL--LSNRHLDRRKRLIIAMDAAFGMEYLHSKS--IVHFDLKCDNL 1108

Query: 306  LVDGEGDSM-VIKVADFGLSKHKLSSHVSCRDLRGTLPYMAYELVS-NAGNISEKVDVY 476
            LV+ +  +  + KV DFGLSK K ++ V+   +RGTLP+MA EL+S ++  +SEKVDV+
Sbjct: 1109 LVNLKDPARPICKVGDFGLSKIKRNTLVT-GGVRGTLPWMAPELLSGSSSKVSEKVDVF 1166

>ref|NP_200569.1| protein kinase family [Arabidopsis thaliana]
            gi|9758322|dbj|BAB08796.1| contains similarity to protein
            kinase~gene_id:MUA2.19 [Arabidopsis thaliana]
          Length = 1054

 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 56/121 (46%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
 Frame = +3

Query: 120  SAASSLSFVRNGSLGQYLRSLNGRRLSLRQRAMIALQAALGMAYLHEQAPAVVHFDLKPD 299
            S A+   F+ NGSL Q+L+  + R +  R+R +IA+  A GM YLH +   +VHFDLK +
Sbjct: 858  SLATVAEFMVNGSLKQFLQKKD-RTIDRRKRLIIAMDTAFGMEYLHGKN--IVHFDLKCE 914

Query: 300  NLLVD-GEGDSMVIKVADFGLSKHKLSSHVSCRDLRGTLPYMAYELVSNAGN-ISEKVDV 473
            NLLV+  +    + K+ D GLSK K  + VS   +RGTLP+MA EL+S   N +SEK+DV
Sbjct: 915  NLLVNMRDPQRPICKIGDLGLSKVKQKTLVS-GGVRGTLPWMAPELLSGKSNMVSEKIDV 973

Query: 474  Y 476
            Y
Sbjct: 974  Y 974

>ref|NP_173077.1| protein kinase family [Arabidopsis thaliana] gi|25518629|pir||F86297
            hypothetical protein F3O9.7 - Arabidopsis thaliana
            gi|4966348|gb|AAD34679.1|AC006341_7 Contains PF|00069
            Eukaryotic protein kinase domain.  ESTs gb|H37741,
            gb|T43005 and gb|AI100340 come from this gene.
            [Arabidopsis thaliana]
          Length = 1147

 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
 Frame = +3

Query: 126  ASSLSFVRNGSLGQYLRSLNGRRLSLRQRAMIALQAALGMAYLHEQAPAVVHFDLKPDNL 305
            A+   ++ +GSL +++     R L  R+R +IA+ AA GM YLH  A  +VHFDLK DNL
Sbjct: 942  ATVTEYMVDGSL-RHVLVRKDRHLDRRKRLIIAMDAAFGMEYLH--AKNIVHFDLKCDNL 998

Query: 306  LVDGEGDSM-VIKVADFGLSKHKLSSHVSCRDLRGTLPYMAYELVS-NAGNISEKVDVY 476
            LV+ +  S  + KV DFGLSK K ++ VS   +RGTLP+MA EL++ ++  +SEKVDV+
Sbjct: 999  LVNLKDPSRPICKVGDFGLSKIKRNTLVS-GGVRGTLPWMAPELLNGSSSKVSEKVDVF 1056

>dbj|BAC22257.1| contains EST D23238(C2469)~kinase-like protein [Oryza sativa
            (japonica cultivar-group)]
          Length = 1270

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
 Frame = +3

Query: 120  SAASSLSFVRNGSLGQYLRSLNGRRLSLRQRAMIALQAALGMAYLHEQAPAVVHFDLKPD 299
            S A+   ++ NGSL Q L+         R+R +IA+  A GM YLHE+   +VHFDLK D
Sbjct: 1072 SVATVTEYMANGSLRQALQ--RHEIFDRRRRLLIAMDVAFGMEYLHEKN--IVHFDLKSD 1127

Query: 300  NLLVD-GEGDSMVIKVADFGLSKHKLSSHVSCRDLRGTLPYMAYELVSNAGN-ISEKVDV 473
            NLLV+  +    + KV D GLSK K  + +S   +RGTLP+MA EL++ + + +SEKVDV
Sbjct: 1128 NLLVNLRDPQHPICKVGDLGLSKVKCQTLIS-GGVRGTLPWMAPELLNGSSSLVSEKVDV 1186

Query: 474  Y 476
            +
Sbjct: 1187 F 1187



EST assemble image


clone accession position
1 LCL004g07_r AV626231 1 244
2 MXL033d08_r BP094961 72 477




Chlamydomonas reinhardtii
Kazusa DNA Research Institute