KCC003044A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003044A_C01 KCC003044A_c01
aaaagaatcctttttagtgaagtggagcgggccTCGACAACCCTGGTTACGTGGCGCAGC
TTGTCAGGTGGGTGAGGCAGCGAACCCTAAAATCACTCTCGCTATCCTCACCTTGTCCAT
ACATACCGTGCGTGCACAGATGTGAGTAAGCGACATAACCAGCATGCTGTGCTGCTTCGA
CAAGCGACAGGAAGGCACACCAAGCATCGAAACATTCAGCCGGGGCATGCCGCTCACGCA
TTTCACATGCATGCCATCTTGAAAGAGGCCAAGACGCCCGCCTTGCGCCTGCCTGGATCA
CATGCTCACCACGGCACTTGCAACTAGTGACGTAGGGTGCGCGACACAGCGTGAACACTC
TCGCCGCCGTACGTGTCACGAGCACCTCTGATCAACCACCACACAAGACGGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003044A_C01 KCC003044A_c01
         (414 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_320303.1| ENSANGP00000016464 [Anopheles gambiae] gi|30174...    33  0.93
ref|XP_103850.1| hypothetical protein XP_103850 [Homo sapiens]         33  1.2
ref|ZP_00124093.1| hypothetical protein [Pseudomonas syringae pv...    33  1.2
ref|XP_327846.1| hypothetical protein [Neurospora crassa] gi|289...    32  1.6
ref|NP_792695.1| conserved hypothetical protein [Pseudomonas syr...    32  2.7

>ref|XP_320303.1| ENSANGP00000016464 [Anopheles gambiae] gi|30174043|gb|EAA00236.2|
           ENSANGP00000016464 [Anopheles gambiae str. PEST]
          Length = 542

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 178 RQATGRHTKHRNIQPGHAAHAFHMHAILKEAKTPALRLPGSHAHHGTC 321
           RQ    H +H    P HAAH  H HA+  ++K    ++   HA   TC
Sbjct: 454 RQHLHHHQQHHTTTPHHAAHLHHQHAL--QSKHSMHQVHSRHAVKYTC 499

>ref|XP_103850.1| hypothetical protein XP_103850 [Homo sapiens]
          Length = 180

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 259 RWHACEMRERHAPAECFDAWCAFLSLVEAAQHAGY 155
           RW  C     H PAE    WC  L++V   +H  Y
Sbjct: 74  RWGTCRDAVHHFPAEGAKHWCPLLTMVPGIRHHNY 108

>ref|ZP_00124093.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
          Length = 380

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/45 (37%), Positives = 23/45 (50%)
 Frame = -3

Query: 259 RWHACEMRERHAPAECFDAWCAFLSLVEAAQHAGYVAYSHLCTHG 125
           RWH  E R       C+D W +FL ++ AA+H G      LC +G
Sbjct: 58  RWHLIEARPG-----CYD-WSSFLPMLRAARHQGTQVIWDLCHYG 96

>ref|XP_327846.1| hypothetical protein [Neurospora crassa] gi|28919980|gb|EAA29369.1|
           hypothetical protein [Neurospora crassa]
          Length = 368

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/67 (34%), Positives = 28/67 (41%)
 Frame = +3

Query: 204 ASKHSAGACRSRISHACHLERGQDARLAPAWITCSPRHLQLVT*GARHSVNTLAAVRVTS 383
           AS   A   RS+    C   R Q   LAPA +T +PR        A     T  A   T+
Sbjct: 3   ASSRGAALLRSQQRSICLQCRNQTRVLAPAGVTSAPRRFYSAEASA---TATATATATTT 59

Query: 384 TSDQPPH 404
           T+  PPH
Sbjct: 60  TTLPPPH 66

>ref|NP_792695.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000] gi|28853322|gb|AAO56390.1| conserved
           hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 380

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 259 RWHACEMRERHAPAECFDAWCAFLSLVEAAQHAGYVAYSHLCTHG 125
           RWH  E R        +D W +FL ++ AAQH G      LC +G
Sbjct: 58  RWHLIETRPNR-----YD-WSSFLPMLRAAQHQGTQVIWDLCHYG 96



EST assemble image


clone accession position
1 LCL002b09_r AV626085 1 324
2 LCL061f01_r AV629592 34 458




Chlamydomonas reinhardtii
Kazusa DNA Research Institute