KCC003043A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003043A_C01 KCC003043A_c01
CACATTCAGGCGCATAGTTTAGAAAGTGTCGTCGGCGTAGTTTGCGGGGGCGTGGGGCCT
TGCTGTTTGATAGGAAGAATAGTGGAAGGCTGTTATGCCGCAACACGCAGGACAACATAT
CACAGCTAGCCGAGACATGTAAAAACAATGGGAAACTTGTGCTTTCGCGTGCAAGAGGAG
CCCCCACGAGGAGCGCCAGACAAGCCCTTGAAGCCGCAGCCGGAGGCCTGGACGCCAGCG
CTTGTCACTTCGAACAGTATAAGCGTGCCCAATGGAGAATGCTTGCTCGACCAAGCACCT
CGCACTTATGCTGTTGATAATGCGCACGGCACGGGCACGGCGTCACTTTGCGGCTTTAGC
GTTGACGACGCACACCTCAAAGAAGCAGCACAGCTACAGAAAACCTGGGCACTACTGACG
ACTATGTCAATGAGCCCCGGCGAACTTACAGCTGACGTCCAGCTGCTGGGACCTATTGGC
TCAGGGTCATCTGCTGTCGTCTATCGTGGAATCTACCAAGGTGGAGAGTCGGCGCTCAAA
ATTATAGTCACACAGGGCAGGAATGAGAGATTGGGCACCCGCGAGGCGCTCCTGAGCCCT
CATCTGCGCCACCCGCATGTTGTGTCGACGTACGCGGTGCGCGGCTGCCAGCTGACGGCA
GAGTTCATCGAGGAAATGGCCACGGATGTGCAGATCACGCCGTCACAATCGCGGAGCACG
CTGCCATCATTGCCCTCACAGCCGTCAGAGGACGGGCTTGGAAACCCGCGCCTGATCCAG
CATGAGCGACAGGGCTGGCGTGAGGTGCTCGCTCGTGTGGGTGCCGCGCCCAACAAACAC
CTGCTGATGCTGGTGCAGGAGCTGTGCGACGCGGGCAGCCTGGGCGCCGCCATCCGGCAG
GGCATGTTCCGGCCCAAGCCGGGCGTGCGGACACCGGCGCTGGCACGACGCGTACTCCTT
CGCACGGCGACGGAGCTGTGCCGCGGGATGGTCCACATCCACACGGCCAACGTGCTGCAC
GGCGACCTCAAGCCCGCCAACGTGCTGCTGGCCCGCTCACGCAAGGACCGCCGCGGCTTC
ACGGTGAAGGTCGCGGACTTCGGTCTGAGCAAGCTGCTGCACACAGACAACAGCCGCATC
GACTCATCGGCAGGCGGCACGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003043A_C01 KCC003043A_c01
         (1163 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_181791.1| protein kinase family [Arabidopsis thaliana] gi...    61  4e-08
pir||D84715 probable protein kinase [imported] - Arabidopsis tha...    59  2e-07
ref|NP_180658.2| protein kinase family [Arabidopsis thaliana]          59  2e-07
dbj|BAA81748.1| calcium-dependent protein kinase [Marchantia pol...    58  4e-07
dbj|BAA81749.1| calcium-dependent protein kinase [Marchantia pol...    58  4e-07

>ref|NP_181791.1| protein kinase family [Arabidopsis thaliana] gi|25408802|pir||C84856
            probable protein kinase [imported] - Arabidopsis thaliana
            gi|4559329|gb|AAD22991.1| putative protein kinase
            [Arabidopsis thaliana] gi|27524889|emb|CAC83101.1|
            putative protein tyrosine kinase [Arabidopsis thaliana]
          Length = 357

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 62/229 (27%), Positives = 90/229 (39%)
 Frame = +1

Query: 475  IGSGSSAVVYRGIYQGGESALKIIVTQGRNERLGTREALLSPHLRHPHVVSTYAVRGCQL 654
            +GSG+S VV RG++   E A+KI + Q                               QL
Sbjct: 110  VGSGTSGVVCRGVWNKTEVAIKIFLGQ-------------------------------QL 138

Query: 655  TAEFIEEMATDVQITPSQSRSTLPSLPSQPSEDGLGNPRLIQHERQGWREVLARVGAAPN 834
            TAE ++    ++ I                          +QH       V+  +GA   
Sbjct: 139  TAENMKVFCNEISILSR-----------------------LQHPN-----VILLLGACTK 170

Query: 835  KHLLMLVQELCDAGSLGAAIRQGMFRPKPGVRTPALARRVLLRTATELCRGMVHIHTANV 1014
               L LV E    GSL   IR          R   L+ +  L+   E+CRG+++IH   +
Sbjct: 171  PPQLSLVTEYMSTGSLYDVIR---------TRKKELSWQRKLKILAEICRGLMYIHKMGI 221

Query: 1015 LHGDLKPANVLLARSRKDRRGFTVKVADFGLSKLLHTDNSRIDSSAGGT 1161
            +H DL  AN LL +S        VK+ DFGLS+ + T  +  D+ A GT
Sbjct: 222  VHRDLTSANCLLNKS-------IVKICDFGLSRRM-TGTAVKDTEAAGT 262

>pir||D84715 probable protein kinase [imported] - Arabidopsis thaliana
            gi|3201626|gb|AAC20735.1| putative protein kinase
            [Arabidopsis thaliana]
          Length = 375

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 56/227 (24%), Positives = 91/227 (39%)
 Frame = +1

Query: 475  IGSGSSAVVYRGIYQGGESALKIIVTQGRNERLGTREALLSPHLRHPHVVSTYAVRGCQL 654
            +G G    V+RG++ G + A+K+ + Q                                L
Sbjct: 62   VGIGFFGEVFRGVWNGTDVAIKLFLEQ-------------------------------DL 90

Query: 655  TAEFIEEMATDVQITPSQSRSTLPSLPSQPSEDGLGNPRLIQHERQGWREVLARVGAAPN 834
            TAE +E+   ++ I    SR   P+                         V+  +GA   
Sbjct: 91   TAENMEDFCNEISIL---SRVRHPN-------------------------VVLFLGACTK 122

Query: 835  KHLLMLVQELCDAGSLGAAIRQGMFRPKPGVRTPALARRVLLRTATELCRGMVHIHTANV 1014
               L ++ E  + GSL   I     + K       L+    LR   ++CRG++ IH   +
Sbjct: 123  PPRLSMITEYMELGSLYYLIHMSGQKKK-------LSWHRRLRMLRDICRGLMCIHRMKI 175

Query: 1015 LHGDLKPANVLLARSRKDRRGFTVKVADFGLSKLLHTDNSRIDSSAG 1155
            +H DLK AN L+ +       +TVK+ DFGLS+++  +N +  SSAG
Sbjct: 176  VHRDLKSANCLVDKH------WTVKICDFGLSRIMTDENMKDTSSAG 216

>ref|NP_180658.2| protein kinase family [Arabidopsis thaliana]
          Length = 312

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 56/227 (24%), Positives = 91/227 (39%)
 Frame = +1

Query: 475  IGSGSSAVVYRGIYQGGESALKIIVTQGRNERLGTREALLSPHLRHPHVVSTYAVRGCQL 654
            +G G    V+RG++ G + A+K+ + Q                                L
Sbjct: 62   VGIGFFGEVFRGVWNGTDVAIKLFLEQ-------------------------------DL 90

Query: 655  TAEFIEEMATDVQITPSQSRSTLPSLPSQPSEDGLGNPRLIQHERQGWREVLARVGAAPN 834
            TAE +E+   ++ I    SR   P+                         V+  +GA   
Sbjct: 91   TAENMEDFCNEISIL---SRVRHPN-------------------------VVLFLGACTK 122

Query: 835  KHLLMLVQELCDAGSLGAAIRQGMFRPKPGVRTPALARRVLLRTATELCRGMVHIHTANV 1014
               L ++ E  + GSL   I     + K       L+    LR   ++CRG++ IH   +
Sbjct: 123  PPRLSMITEYMELGSLYYLIHMSGQKKK-------LSWHRRLRMLRDICRGLMCIHRMKI 175

Query: 1015 LHGDLKPANVLLARSRKDRRGFTVKVADFGLSKLLHTDNSRIDSSAG 1155
            +H DLK AN L+ +       +TVK+ DFGLS+++  +N +  SSAG
Sbjct: 176  VHRDLKSANCLVDKH------WTVKICDFGLSRIMTDENMKDTSSAG 216

>dbj|BAA81748.1| calcium-dependent protein kinase [Marchantia polymorpha]
            gi|5162880|dbj|BAA81750.1| calcium-dependent protein
            kinase [Marchantia polymorpha]
          Length = 548

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
 Frame = +1

Query: 775  IQHERQGWREVLARVGAAPNKHLLMLVQELCDAGSL-GAAIRQGMFRPKPGVRTPALARR 951
            I H  +G + ++   GA  +KH + LV ELC  G L    I++G +              
Sbjct: 132  IMHHLEGQKNIVELKGAYEDKHNVHLVMELCAGGELFDRIIQRGHYSE------------ 179

Query: 952  VLLRTATELCRGMVHI----HTANVLHGDLKPANVLLARSRKDRRGFTVKVADFGLS 1110
               R A  LCR +V +    H+  V+H DLKP N LLA  ++D     +K  DFGLS
Sbjct: 180  ---RAAAALCRTIVQVVQTCHSLGVMHRDLKPENFLLANKKEDA---PLKATDFGLS 230

>dbj|BAA81749.1| calcium-dependent protein kinase [Marchantia polymorpha]
            gi|5162882|dbj|BAA81751.1| calcium-dependent protein
            kinase [Marchantia polymorpha]
          Length = 548

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
 Frame = +1

Query: 775  IQHERQGWREVLARVGAAPNKHLLMLVQELCDAGSL-GAAIRQGMFRPKPGVRTPALARR 951
            I H  +G + ++   GA  +KH + LV ELC  G L    I++G +              
Sbjct: 132  IMHHLEGQKNIVELKGAYEDKHNVHLVMELCAGGELFDRIIQRGHYSE------------ 179

Query: 952  VLLRTATELCRGMVHI----HTANVLHGDLKPANVLLARSRKDRRGFTVKVADFGLS 1110
               R A  LCR +V +    H+  V+H DLKP N LLA  ++D     +K  DFGLS
Sbjct: 180  ---RAAAALCRTIVQVVQTCHSLGVMHRDLKPENFLLANKKEDA---PLKATDFGLS 230



EST assemble image


clone accession position
1 LCL035g09_r AV628038 1 450
2 LCL087g04_r AV631024 1 505
3 LCL002b03_r AV626081 21 581
4 LCL044a06_r AV628577 389 676
5 LCL022d11_r AV627190 458 941
6 LCL090c12_r AV631211 777 1163




Chlamydomonas reinhardtii
Kazusa DNA Research Institute