KCC003034A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003034A_C01 KCC003034A_c01
ctggagggatacgcaggcgccggcctgtacgagtccatcaccatggaccccagcctgctc
aagaaggtggactacatggaGGACCGGCTGGTGCAGGACCCCGCGTACAGGCGCGACCTG
CTGTCGCGCATCTGCCGCCTGGGCGCCTCCATTGAGGGCGCGCTGGGCACGGCGCAGGAC
ATTGAGGGCGTGGTGGCGCCCGACGGAGCCATCACCGTTGTGCAGACGCGCCCGCAGGTG
TAGACGTGAAAGGCTGCATGGCGGGTGCCCAGGGGGTGCGGGGGCCGGGAGCTGGAGCAG
CACTGCGTGGGCGTGGACGTGTGTTGTGAGGGCCAACGGCTTTGGCCGTGTTGCCGCCGT
GTGGCGGGCCAGGCGTGCGTCTGGTGTTCGTGATGACGGGTGTGCAGAGAGCTGGCGGCG
GGGGGCCTTGGTGCTCATACAGATGTGTGTGGACTTTGACGCCATCCTAGAGGAGCACGT
GGGTGGGAGGCACACCTATTTTATTGCGCCCGTTATATGTGTTTCCGCTCTGATGTATGG
GTGTGTGATACGTTTGTGGCCCAGCCCAGCGGGCGTGCTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003034A_C01 KCC003034A_c01
         (581 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM18228.1| R1 [Citrus reticulata]                                  84  2e-15
gb|AAK96541.1| At1g10760/F20B24.26 [Arabidopsis thaliana]              82  4e-15
pir||B86241 hypothetical protein [imported] - Arabidopsis thalia...    82  4e-15
gb|AAF17665.1|AC009398_14 F20B24.19 [Arabidopsis thaliana]             82  4e-15
ref|NP_563877.1| SEX1 protein; nuclear gene for chloroplast prod...    82  4e-15

>gb|AAM18228.1| R1 [Citrus reticulata]
          Length = 1475

 Score = 83.6 bits (205), Expect = 2e-15
 Identities = 44/80 (55%), Positives = 55/80 (68%)
 Frame = +1

Query: 1    LEGYAGAGLYESITMDPSLLKKVDYMEDRLVQDPAYRRDLLSRICRLGASIEGALGTAQD 180
            LEGYAGAGLY+S+ MD +    +DY  D L+ D  +++ +LS I R G  IE   G+AQD
Sbjct: 1397 LEGYAGAGLYDSVPMDEAEKVVLDYSSDHLITDGHFQQSILSSIARAGCEIEELFGSAQD 1456

Query: 181  IEGVVAPDGAITVVQTRPQV 240
            IEGVV  DG I VVQTRPQ+
Sbjct: 1457 IEGVVR-DGKIYVVQTRPQM 1475

>gb|AAK96541.1| At1g10760/F20B24.26 [Arabidopsis thaliana]
          Length = 170

 Score = 82.4 bits (202), Expect = 4e-15
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = +1

Query: 1   LEGYAGAGLYESITMDPSLLKKVDYMEDRLVQDPAYRRDLLSRICRLGASIEGALGTAQD 180
           LEGYAGAGLY+S+ MD      +DY  D L+ D ++++ +LS I R G +IE   GTAQD
Sbjct: 92  LEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQKKVLSDIARAGDAIEKLYGTAQD 151

Query: 181 IEGVVAPDGAITVVQTRPQV 240
           IEGV+  DG + VVQTRPQV
Sbjct: 152 IEGVIR-DGKLYVVQTRPQV 170

>pir||B86241 hypothetical protein [imported] - Arabidopsis thaliana
            gi|4874272|gb|AAD31337.1|AC007354_10 Strong similarity to
            gb|Y09533 involved in starch metabolism from Solanum
            tuberosum and contains a PF|01326 Pyruvate phosphate
            dikinase, PEP/pyruvate binding domain.  EST gb|N96757
            comes from this gene. [Arabidopsis thaliana]
          Length = 1358

 Score = 82.4 bits (202), Expect = 4e-15
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = +1

Query: 1    LEGYAGAGLYESITMDPSLLKKVDYMEDRLVQDPAYRRDLLSRICRLGASIEGALGTAQD 180
            LEGYAGAGLY+S+ MD      +DY  D L+ D ++++ +LS I R G +IE   GTAQD
Sbjct: 1280 LEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQKKVLSDIARAGDAIEKLYGTAQD 1339

Query: 181  IEGVVAPDGAITVVQTRPQV 240
            IEGV+  DG + VVQTRPQV
Sbjct: 1340 IEGVIR-DGKLYVVQTRPQV 1358

>gb|AAF17665.1|AC009398_14 F20B24.19 [Arabidopsis thaliana]
          Length = 1540

 Score = 82.4 bits (202), Expect = 4e-15
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = +1

Query: 1    LEGYAGAGLYESITMDPSLLKKVDYMEDRLVQDPAYRRDLLSRICRLGASIEGALGTAQD 180
            LEGYAGAGLY+S+ MD      +DY  D L+ D ++++ +LS I R G +IE   GTAQD
Sbjct: 1462 LEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQKKVLSDIARAGDAIEKLYGTAQD 1521

Query: 181  IEGVVAPDGAITVVQTRPQV 240
            IEGV+  DG + VVQTRPQV
Sbjct: 1522 IEGVIR-DGKLYVVQTRPQV 1540

>ref|NP_563877.1| SEX1 protein; nuclear gene for chloroplast product [Arabidopsis
            thaliana] gi|12044358|gb|AAG47821.1|AF312027_1 SEX1
            [Arabidopsis thaliana]
          Length = 1399

 Score = 82.4 bits (202), Expect = 4e-15
 Identities = 44/80 (55%), Positives = 56/80 (70%)
 Frame = +1

Query: 1    LEGYAGAGLYESITMDPSLLKKVDYMEDRLVQDPAYRRDLLSRICRLGASIEGALGTAQD 180
            LEGYAGAGLY+S+ MD      +DY  D L+ D ++++ +LS I R G +IE   GTAQD
Sbjct: 1321 LEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQKKVLSDIARAGDAIEKLYGTAQD 1380

Query: 181  IEGVVAPDGAITVVQTRPQV 240
            IEGV+  DG + VVQTRPQV
Sbjct: 1381 IEGVIR-DGKLYVVQTRPQV 1399



EST assemble image


clone accession position
1 MX008h12_r BP086443 1 443
2 LC099b04_r AV625869 262 581




Chlamydomonas reinhardtii
Kazusa DNA Research Institute