Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003032A_C01 KCC003032A_c01
(350 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34804|CC40_CAEEL Cuticle collagen 40 37 0.054
ref|NP_493913.1| COLlagen structural gene (col-40) [Caenorhabdit... 37 0.054
pir||T37286 collagen 40 - Caenorhabditis elegans gi|289664|gb|AA... 37 0.054
emb|CAA76851.1| winged-helix transcription factor [Gallus gallus] 36 0.16
emb|CAB51072.1| hypothetical protein [Homo sapiens] 35 0.27
>sp|P34804|CC40_CAEEL Cuticle collagen 40
Length = 306
Score = 37.4 bits (85), Expect = 0.054
Identities = 22/64 (34%), Positives = 24/64 (37%)
Frame = -3
Query: 336 PPPPTPRHTPNRG*AAGPTPQGHGSEAAPSAAPPWRDRLWVGRDGAPYTPATLLASSLGK 157
P PP P P A+ P P G +A P AP G GAP P A G
Sbjct: 241 PGPPGPAGNPGSAGASEPGPAGPAGDAGPDGAP--------GNAGAPGAPGEAGAPGSGG 292
Query: 156 PCSH 145
C H
Sbjct: 293 GCDH 296
>ref|NP_493913.1| COLlagen structural gene (col-40) [Caenorhabditis elegans]
gi|7507766|pir||T32458 hypothetical protein T13B5.4 -
Caenorhabditis elegans gi|2435590|gb|AAB71295.1|
Hypothetical protein T13B5.4 [Caenorhabditis elegans]
Length = 416
Score = 37.4 bits (85), Expect = 0.054
Identities = 22/64 (34%), Positives = 24/64 (37%)
Frame = -3
Query: 336 PPPPTPRHTPNRG*AAGPTPQGHGSEAAPSAAPPWRDRLWVGRDGAPYTPATLLASSLGK 157
P PP P P A+ P P G +A P AP G GAP P A G
Sbjct: 253 PGPPGPAGNPGSAGASEPGPAGPAGDAGPDGAP--------GNAGAPGAPGEAGAPGSGG 304
Query: 156 PCSH 145
C H
Sbjct: 305 GCDH 308
>pir||T37286 collagen 40 - Caenorhabditis elegans gi|289664|gb|AAA17726.1|
col-40 collagen
Length = 308
Score = 37.4 bits (85), Expect = 0.054
Identities = 22/64 (34%), Positives = 24/64 (37%)
Frame = -3
Query: 336 PPPPTPRHTPNRG*AAGPTPQGHGSEAAPSAAPPWRDRLWVGRDGAPYTPATLLASSLGK 157
P PP P P A+ P P G +A P AP G GAP P A G
Sbjct: 243 PGPPGPAGNPGSAGASEPGPAGPAGDAGPDGAP--------GNAGAPGAPGEAGAPGSGG 294
Query: 156 PCSH 145
C H
Sbjct: 295 GCDH 298
>emb|CAA76851.1| winged-helix transcription factor [Gallus gallus]
Length = 528
Score = 35.8 bits (81), Expect = 0.16
Identities = 28/93 (30%), Positives = 37/93 (39%)
Frame = -3
Query: 339 SPPPPTPRHTPNRG*AAGPTPQGHGSEAAPSAAPPWRDRLWVGRDGAPYTPATLLASSLG 160
+PPPP P T A G P+G G AA +A PP R + +G P +
Sbjct: 156 APPPPRPPPTA----ATGAEPEGGGPPAAGAAPPPVRIQDIKTENGTASPPQAVSPPGAA 211
Query: 159 KPCSHMKAWSKKIYRSMLLARRAPAG*ALRACR 61
P + S L + +P G AL A R
Sbjct: 212 PPLGAVPKIESPDSSSSLSSGGSPRGGALPAAR 244
>emb|CAB51072.1| hypothetical protein [Homo sapiens]
Length = 3261
Score = 35.0 bits (79), Expect = 0.27
Identities = 20/49 (40%), Positives = 25/49 (50%)
Frame = +2
Query: 158 LPRELASSVAGVYGAPSLPTQRRSRHGGAALGAASLPWPCGVGPAA*PR 304
LP +L + V V PS+P R H AA A P P G GP++ PR
Sbjct: 2587 LPSKLPTEVNHVPSGPSIPADRTVSHLAAAKLDAHSPRPSGPGPSSFPR 2635
