KCC003025A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003025A_C01 KCC003025A_c01
gaATAGCAAGATAAACGCTACCGAAGGGCCCAAGCGTGGGAGAAGGCTCTTGGCAGGGTT
TTGCGTTGTTCGGCCCCTAGCGGCTTACTGAGCACCATGGCTTGGCGCAACTCTCTTTCC
AAGAGCATGCAGGAGCTTAGGATTCACCTGTGCCAGACTTCGGCGGGGAGCAAGGGTGTT
CGGGACTTCATCGTTGCTAACTATGCGGAGATGAAGAAGGCGAACCCGCACTTCCCCATC
CTCATCCGCGAGTGCGCGGGCACCGAGGCGTCGCTCACAGCGCGCTACGACTTCGGCGCT
GAGAAGTCGGTCAACGTACAGGGCGCCACGACGGGGGCGGTGCAGCAGCAGCTGGAGCAG
CTCATCCTGGCGGGCCAGTCTATGCCCAAGTCCGGCGAGTAAGCGCGCAGTGGCGAAGAT
CTTGGGCGACAGGCCGCCTTCAGGGCCCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003025A_C01 KCC003025A_c01
         (450 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ63699.1| NADH:ubiquinone oxidoreductase B8 subunit [Chlamy...   202  1e-51
ref|NP_199600.1| NADH dehydrogenase 10.5K chain-related protein ...   100  4e-21
gb|AAO51781.1| similar to Arabidopsis thaliana (Mouse-ear cress)...    93  9e-19
ref|XP_314269.1| ENSANGP00000018740 [Anopheles gambiae] gi|21297...    91  4e-18
ref|XP_307497.1| ENSANGP00000002037 [Anopheles gambiae] gi|21291...    91  4e-18

>gb|AAQ63699.1| NADH:ubiquinone oxidoreductase B8 subunit [Chlamydomonas
           reinhardtii]
          Length = 101

 Score =  202 bits (513), Expect = 1e-51
 Identities = 101/101 (100%), Positives = 101/101 (100%)
 Frame = +1

Query: 97  MAWRNSLSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASL 276
           MAWRNSLSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASL
Sbjct: 1   MAWRNSLSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASL 60

Query: 277 TARYDFGAEKSVNVQGATTGAVQQQLEQLILAGQSMPKSGE 399
           TARYDFGAEKSVNVQGATTGAVQQQLEQLILAGQSMPKSGE
Sbjct: 61  TARYDFGAEKSVNVQGATTGAVQQQLEQLILAGQSMPKSGE 101

>ref|NP_199600.1| NADH dehydrogenase 10.5K chain-related protein [Arabidopsis
           thaliana] gi|10177925|dbj|BAB11336.1| NADH dehydrogenase
           10.5K chain-like protein [Arabidopsis thaliana]
           gi|17644165|gb|AAL38780.1| putative NADH dehydrogenase
           10.5K chain [Arabidopsis thaliana]
           gi|20465337|gb|AAM20072.1| putative NADH dehydrogenase
           10.5K chain [Arabidopsis thaliana]
           gi|21593502|gb|AAM65469.1| NADH dehydrogenase 10.5K
           chain-like protein [Arabidopsis thaliana]
          Length = 97

 Score =  100 bits (249), Expect = 4e-21
 Identities = 47/93 (50%), Positives = 62/93 (66%)
 Frame = +1

Query: 97  MAWRNSLSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASL 276
           MAWR S+SKSM+ELRI LCQ+S  S   R F+  NY ++K  NP  PILIREC+G +  +
Sbjct: 1   MAWRGSISKSMKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQM 60

Query: 277 TARYDFGAEKSVNVQGATTGAVQQQLEQLILAG 375
            ARYD G E+ VN+ G T   + + LE L+ +G
Sbjct: 61  WARYDMGVERCVNLDGLTEPQILKALENLVKSG 93

>gb|AAO51781.1| similar to Arabidopsis thaliana (Mouse-ear cress). Putative NADH
           dehydrogenase 10.5K chain [Dictyostelium discoideum]
          Length = 131

 Score = 92.8 bits (229), Expect = 9e-19
 Identities = 44/101 (43%), Positives = 67/101 (65%)
 Frame = +1

Query: 97  MAWRNSLSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASL 276
           M+WR  LS ++QE+RI  CQ++  S+G+R+F+V NY+++K+ NP  P+LIRE  G E  +
Sbjct: 8   MSWRALLSHNLQEIRITFCQSNQSSEGLRNFVVKNYSDLKRLNPKLPLLIREGHGVEPVI 67

Query: 277 TARYDFGAEKSVNVQGATTGAVQQQLEQLILAGQSMPKSGE 399
            ARYD+G E+   V   T   V+++L++L L G    KS E
Sbjct: 68  YARYDWGKEEKKVVTNLTEQEVEEKLKELCLMGSKFDKSPE 108

>ref|XP_314269.1| ENSANGP00000018740 [Anopheles gambiae] gi|21297452|gb|EAA09597.1|
           ENSANGP00000018740 [Anopheles gambiae str. PEST]
          Length = 131

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 41/83 (49%), Positives = 57/83 (68%)
 Frame = +1

Query: 115 LSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASLTARYDF 294
           L+ S++ELR+HLCQT   SKGVRDF+   Y ++K+ NP  PIL+REC+G +  L ARY+ 
Sbjct: 45  LNPSVKELRLHLCQTGEESKGVRDFVNTRYVQLKRDNPSLPILVRECSGVQPRLWARYEL 104

Query: 295 GAEKSVNVQGATTGAVQQQLEQL 363
           G EKSV +  AT   + + +E L
Sbjct: 105 GKEKSVTLTNATAEDISKHIEAL 127

>ref|XP_307497.1| ENSANGP00000002037 [Anopheles gambiae] gi|21291154|gb|EAA03299.1|
           ENSANGP00000002037 [Anopheles gambiae str. PEST]
          Length = 93

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 41/83 (49%), Positives = 57/83 (68%)
 Frame = +1

Query: 115 LSKSMQELRIHLCQTSAGSKGVRDFIVANYAEMKKANPHFPILIRECAGTEASLTARYDF 294
           L+ S++ELR+HLCQT   SKGVRDF+   Y ++K+ NP  PIL+REC+G +  L ARY+ 
Sbjct: 11  LNPSVKELRLHLCQTGEESKGVRDFVNTRYVQLKRDNPSLPILVRECSGVQPRLWARYEL 70

Query: 295 GAEKSVNVQGATTGAVQQQLEQL 363
           G EKSV +  AT   + + +E L
Sbjct: 71  GKEKSVTLTNATAEDISKHIEAL 93



EST assemble image


clone accession position
1 MXL006a08_r BP093278 1 359
2 LC093f05_r AV625493 3 450
3 MX251g09_r BP092264 29 322




Chlamydomonas reinhardtii
Kazusa DNA Research Institute