>KCC003024A_C01 KCC003024A_c01
CACAGGCTGGCACTGGTCCAAGTTGATTATCAGATACGTAGATTGCTTCAATCTAAGCAC
TTATGTACCTGTCAGAAGGCTTGTTGTGAGCTGCGAGCGCGATCATCTGTCCTTCAACAG
CCCCGCTGGCAGCCCCGTATGGTGACATCAATGAAGCCCGAGCTTCGGTATGAAGCAATT
TTAAAACGCGTAGGGCTGAACGGTTTCGCCGCAAGGGCGAACTTTCGGCGTCGGTTTCGG
CCTCGGCGACGGCGATCGCAACTATGAAGCCCAGGTAAACCCAGGTAAATTATGAACTGC
TCCAATTAAGTGCGCGCTTTAGCGCCACTTAAACGATCCATAATAGCAACCGATCGAGCG
CTCATGGCGCCGCTTCAAACAAGTTCCTGTGTCAAGTCCCTGTGTCAAGATCCTGTGTCA
AGAGTCACAAGCAGTGTCACAAGTCTCAGTGCGCAGTTGGTAGCAAGAAGCAAAGATG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003024A_C01 KCC003024A_c01
         (478 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK50599.1|AC084404_24 hypothetical protein [Oryza sativa]          32  2.9
gb|AAO25836.1| PksE [Amycolatopsis orientalis]                         31  6.5

>gb|AAK50599.1|AC084404_24 hypothetical protein [Oryza sativa]
          Length = 144

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
 Frame = -2

Query: 255 SPSPRPKPTPKVRPCGETVQPYAF*NCFIP-KLGLH*CHHTGLPAGLLKDR*SRSQLTTS 79
           SPSP P  TP+   C  ++ P +  + F+      +  HH  LP G+L+ R   +   +S
Sbjct: 36  SPSPIPSTTPRATFCTSSLPPASIPSSFVSVSASSNSLHHHPLPLGILRLRLIPAPSRSS 95

Query: 78  LL 73
           LL
Sbjct: 96  LL 97

>gb|AAO25836.1| PksE [Amycolatopsis orientalis]
          Length = 1939

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 21/78 (26%), Positives = 34/78 (42%)
 Frame = -1

Query: 274 LGFIVAIAVAEAETDAESSPLRRNRSALRVLKLLHTEARASLMSPYGAASGAVEGQMIAL 95
           LG + A+    A T+ E   L + R  +         A A++ +    A G  EG+ + +
Sbjct: 658 LGELTALHWGGALTEREVLKLAKIRGKVMATASDGDGAMAAIAATPSVAEGLAEGEEVVI 717

Query: 94  AAHNKPSDRYISA*IEAI 41
           A +N P    +S   EAI
Sbjct: 718 AGYNAPEQTVLSGPAEAI 735

  Database: nr
    Posted date:  Oct 14, 2003 12:26 AM
  Number of letters in database: 498,525,298
  Number of sequences in database:  1,537,769
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,227,410
Number of Sequences: 1537769
Number of extensions: 8773618
Number of successful extensions: 35331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34386
length of database: 498,525,298
effective HSP length: 114
effective length of database: 323,219,632
effective search space used: 14221663808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 LC091h05_r AV625387 1 478 2 LC091h06_r AV625388 1 411

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