KCC003022A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003022A_C01 KCC003022A_c01
CCAAAACGTAGCATAATCTGTGTCCACCCGAGGCAAAAAGTCCGGTTCCACGAAACGACT
CTTGTTTGCTGCAAAGGGCTTTTCGGGGTATTCCCGCGCTTACAGGCTTCTCTGTACAGT
TATATGTAGATACAATTAGCACCTCAGGCGGGGCCTGGTGAATAGCTGACGCATACTCAA
GTTGAGCACATGGCACGGCGTCAGGATGGTTCCCGCCAGGGGCTCCTCTGCCTCCTGGGG
CTTCTCGCGGCACAGCTACAGCCGCTCCTAGCCACCACGGCTCAACCTAGCTCTGCATCT
TTGAGCTCACGCCACTCCAACAACTGGGCGGTGCTGGTGTCAACCTCCCGCTTCTGGCTG
AACTACCGGCACATCGTCAACACCATGTCGATTTACCACGTGGTGAAGCGGCTGGGCATT
CCGGACAGCAACATCATCCTCATGATACCTGACGACATGGCGTGCAATCCTCGCAACCCG
CTGCCAGCCCAGCTCTTCAACAACGAGAGCCGCAAGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003022A_C01 KCC003022A_c01
         (519 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_563825.1| GPI-anchor transamidase (U32517) -related [Arab...   115  4e-25
gb|AAM61446.1| putative GPI-anchor transamidase [Arabidopsis tha...   115  4e-25
ref|XP_313575.1| ENSANGP00000013498 [Anopheles gambiae] gi|21297...   113  2e-24
emb|CAA68871.1| gpi8 [Homo sapiens]                                   112  2e-24
gb|AAH26186.1| Similar to phosphatidylinositol glycan, class K [...   112  2e-24

>ref|NP_563825.1| GPI-anchor transamidase (U32517) -related [Arabidopsis thaliana]
           gi|30680805|ref|NP_849616.1| GPI-anchor transamidase
           (U32517) -related [Arabidopsis thaliana]
           gi|26450273|dbj|BAC42253.1| putative GPI-anchor
           transamidase [Arabidopsis thaliana]
          Length = 388

 Score =  115 bits (287), Expect = 4e-25
 Identities = 52/77 (67%), Positives = 61/77 (78%)
 Frame = +1

Query: 289 SSASLSSRHSNNWAVLVSTSRFWLNYRHIVNTMSIYHVVKRLGIPDSNIILMIPDDMACN 468
           SS   ++ H+NNWAVLV TSRFW NYRH+ NT+S+Y  VKRLGIPD  IILM+ DDMACN
Sbjct: 16  SSTGDTTIHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACN 75

Query: 469 PRNPLPAQLFNNESRKL 519
            RN  PAQ+FNNE+ KL
Sbjct: 76  ARNEYPAQVFNNENHKL 92

>gb|AAM61446.1| putative GPI-anchor transamidase [Arabidopsis thaliana]
          Length = 388

 Score =  115 bits (287), Expect = 4e-25
 Identities = 52/77 (67%), Positives = 61/77 (78%)
 Frame = +1

Query: 289 SSASLSSRHSNNWAVLVSTSRFWLNYRHIVNTMSIYHVVKRLGIPDSNIILMIPDDMACN 468
           SS   ++ H+NNWAVLV TSRFW NYRH+ NT+S+Y  VKRLGIPD  IILM+ DDMACN
Sbjct: 16  SSTGDTTIHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACN 75

Query: 469 PRNPLPAQLFNNESRKL 519
            RN  PAQ+FNNE+ KL
Sbjct: 76  ARNEYPAQVFNNENHKL 92

>ref|XP_313575.1| ENSANGP00000013498 [Anopheles gambiae] gi|21297008|gb|EAA09153.1|
           ENSANGP00000013498 [Anopheles gambiae str. PEST]
          Length = 323

 Score =  113 bits (282), Expect = 2e-24
 Identities = 50/78 (64%), Positives = 59/78 (75%)
 Frame = +1

Query: 286 PSSASLSSRHSNNWAVLVSTSRFWLNYRHIVNTMSIYHVVKRLGIPDSNIILMIPDDMAC 465
           P+    SS H+NNWAVLV TSRFW NYRHI N +S+Y  VKRLGIPDS I+LM+ DDMAC
Sbjct: 2   PAKFVTSSSHTNNWAVLVDTSRFWFNYRHIANVLSVYRSVKRLGIPDSQILLMVADDMAC 61

Query: 466 NPRNPLPAQLFNNESRKL 519
           N RNP PA +FNN  + +
Sbjct: 62  NARNPRPATVFNNAKQHI 79

>emb|CAA68871.1| gpi8 [Homo sapiens]
          Length = 396

 Score =  112 bits (281), Expect = 2e-24
 Identities = 48/71 (67%), Positives = 61/71 (85%)
 Frame = +1

Query: 307 SRHSNNWAVLVSTSRFWLNYRHIVNTMSIYHVVKRLGIPDSNIILMIPDDMACNPRNPLP 486
           S H+NNWAVLV TSRFW NYRH+ NT+S+Y  VKRLGIPDS+I+LM+ DDMACNPRNP P
Sbjct: 41  SGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKP 100

Query: 487 AQLFNNESRKL 519
           A +F++++ +L
Sbjct: 101 ATVFSHKNMEL 111

>gb|AAH26186.1| Similar to phosphatidylinositol glycan, class K [Homo sapiens]
          Length = 332

 Score =  112 bits (281), Expect = 2e-24
 Identities = 48/71 (67%), Positives = 61/71 (85%)
 Frame = +1

Query: 307 SRHSNNWAVLVSTSRFWLNYRHIVNTMSIYHVVKRLGIPDSNIILMIPDDMACNPRNPLP 486
           S H+NNWAVLV TSRFW NYRH+ NT+S+Y  VKRLGIPDS+I+LM+ DDMACNPRNP P
Sbjct: 40  SGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKP 99

Query: 487 AQLFNNESRKL 519
           A +F++++ +L
Sbjct: 100 ATVFSHKNMEL 110



EST assemble image


clone accession position
1 LC089e06_r AV625224 1 483
2 LCL032a10_r AV627788 1 519




Chlamydomonas reinhardtii
Kazusa DNA Research Institute