KCC003016A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003016A_C01 KCC003016A_c01
agagaACTAAGCATACTACTTTCGTGATGCAGACCACCGTAAATCGCTCAAACTGCTCCC
GGTCGCTTGCACATGGCTGCAAGCAGGCGCCACCAAAGCCACGCTCCCTTGCTAGACGCC
ATGCTGCCAAAGTCAGCAACTCACAGTCCTCACCACATGTCGAGCTCAGCGAGCATGGCA
GCTGGGTGTCACAATCTCGACGTGCTGCGATGCTCGGTGTGCTCGCGACGGGCGCAGCGA
TGACTCTGTCGCTTCCGCGGGCGGCGCAAGCAGATGACTTCGTAACTCTCCCTTCCGGCA
TCAAGGTGCTGACTATCAGGGAGGGCGAGGGTGCTACGCCGCAGCCGGGTGACACCGTGG
AGGTGCACTGGGCGGGCTTCACCAAGGGCTACCAGGGCAAGCGCATTGACAACACCAGTG
TACGGGATGAGCCCTACGAGTTTAAGCTGGGCAGCGGGCAGGCCATCAAGGCGTTTGAGA
TCGCTGTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003016A_C01 KCC003016A_c01
         (489 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00110945.1| COG0545: FKBP-type peptidyl-prolyl cis-trans ...    71  8e-12
ref|NP_193718.1| immunophilin / FKBP-type peptidyl-prolyl cis-tr...    64  8e-10
ref|ZP_00073903.1| COG0545: FKBP-type peptidyl-prolyl cis-trans ...    61  6e-09
ref|ZP_00012083.1| COG0545: FKBP-type peptidyl-prolyl cis-trans ...    60  1e-08
ref|NP_484621.1| FKBP-type peptidyl-prolyl cis-trans isomerase [...    58  7e-08

>ref|ZP_00110945.1| COG0545: FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Nostoc
           punctiforme]
          Length = 166

 Score = 70.9 bits (172), Expect = 8e-12
 Identities = 33/69 (47%), Positives = 47/69 (67%)
 Frame = +3

Query: 282 VTLPSGIKVLTIREGEGATPQPGDTVEVHWAGFTKGYQGKRIDNTSVRDEPYEFKLGSGQ 461
           VT PSG+K + ++EG GATPQPG TVEVH+ G  +   G + D++  R +P+ FK+G GQ
Sbjct: 56  VTTPSGLKYVELKEGTGATPQPGQTVEVHYVGTLE--DGTKFDSSRDRGQPFSFKIGVGQ 113

Query: 462 AIKAFEIAV 488
            IK ++  V
Sbjct: 114 VIKGWDEGV 122

>ref|NP_193718.1| immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase
           [Arabidopsis thaliana] gi|7487069|pir||T04764
           hypothetical protein T16H5.190 - Arabidopsis thaliana
           gi|3250692|emb|CAA19700.1| putative protein [Arabidopsis
           thaliana] gi|6686800|emb|CAB64722.1| FKBP like protein
           [Arabidopsis thaliana] gi|7268779|emb|CAB78985.1|
           putative protein [Arabidopsis thaliana]
          Length = 229

 Score = 64.3 bits (155), Expect = 8e-10
 Identities = 47/143 (32%), Positives = 71/143 (48%), Gaps = 9/143 (6%)
 Frame = +3

Query: 87  APPKPRSLARRHAAKVSNSQSSPHVELSEHGSWVSQSRRAAMLGVLATGAAMTLSLPRAA 266
           +PP  R  A R +A  S+S SS  V         + SRR+  L ++A  +++  S   ++
Sbjct: 23  SPPSLRIFASRSSAPSSSSSSSSTV--------AAASRRSISLSIIAVTSSVVSSFCFSS 74

Query: 267 QA-DDFVTLPS--GIKVLTIREGEGATPQPGDTVEVHWAGFTKGYQGKRIDNTSVRDE-- 431
            A  DF  +P+  G+K L +R G+G  P  GD +E+H+ G     QG R D+T    +  
Sbjct: 75  PALADFSEIPNSGGVKALDLRIGDGDVPIEGDQIEIHYYGRLAAKQGWRFDSTYDHKDSN 134

Query: 432 ----PYEFKLGSGQAIKAFEIAV 488
               P+ F LGS + I   E AV
Sbjct: 135 GEAVPFTFVLGSSKVIPGIETAV 157

>ref|ZP_00073903.1| COG0545: FKBP-type peptidyl-prolyl cis-trans isomerases 1
           [Trichodesmium erythraeum IMS101]
          Length = 156

 Score = 61.2 bits (147), Expect = 6e-09
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
 Frame = +3

Query: 264 AQADDFVTLP-SGIKVLTIREGEGATPQPGDTVEVHWAGFTKGYQGKRIDNTSVRDEPYE 440
           AQ D+ VT   SG++ + + EG+GATPQ G TV VH+ G  +   G + D++  R++P++
Sbjct: 38  AQDDEKVTTTDSGLQYVDVVEGDGATPQRGQTVVVHYTGTLE--DGSKFDSSRDRNQPFQ 95

Query: 441 FKLGSGQAIKAFEIAV 488
           FK+G GQ IK ++  V
Sbjct: 96  FKVGVGQVIKGWDEGV 111

>ref|ZP_00012083.1| COG0545: FKBP-type peptidyl-prolyl cis-trans isomerases 1
           [Rhodopseudomonas palustris]
          Length = 181

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 30/97 (30%), Positives = 56/97 (56%), Gaps = 2/97 (2%)
 Frame = +3

Query: 204 AAMLGVLATGAAMTLSLPRAAQADDFVTLPSGIKVLTIREGEGATPQPGDTVEVHWAG-- 377
           A  +  L+  AA+  S P  +++   VT PSG++++  + G GA+P  G    +H+ G  
Sbjct: 41  ALAVTALSPAAALMSSTPAMSESAKSVTTPSGLQIVDTQVGTGASPARGQICVMHYTGWL 100

Query: 378 FTKGYQGKRIDNTSVRDEPYEFKLGSGQAIKAFEIAV 488
           +  G + ++ D++  R+EP+EF +G G+ IK ++  V
Sbjct: 101 YENGAKTRKFDSSVDRNEPFEFPIGMGRVIKGWDEGV 137

>ref|NP_484621.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Nostoc sp. PCC 7120]
           gi|25292526|pir||AH1878 FKBP-type peptidyl-prolyl
           cis-trans isomerase [imported] - Nostoc sp. (strain PCC
           7120) gi|17129922|dbj|BAB72535.1| FKBP-type
           peptidyl-prolyl cis-trans isomerase [Nostoc sp. PCC
           7120]
          Length = 165

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 28/66 (42%), Positives = 41/66 (61%)
 Frame = +3

Query: 282 VTLPSGIKVLTIREGEGATPQPGDTVEVHWAGFTKGYQGKRIDNTSVRDEPYEFKLGSGQ 461
           VT  SG+K + I EG GATP+ G TV VH+ G  +   G + D++  R+ P+ F +G GQ
Sbjct: 55  VTTDSGLKYVEIEEGTGATPKSGQTVVVHYTGTLE--DGTKFDSSRDRNRPFSFTIGVGQ 112

Query: 462 AIKAFE 479
            IK ++
Sbjct: 113 VIKGWD 118



EST assemble image


clone accession position
1 LC087a12_r AV625043 1 489
2 MX065d05_r BP088631 3 304
3 MX044c07_r BP087822 24 376




Chlamydomonas reinhardtii
Kazusa DNA Research Institute