KCC003011A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003011A_C01 KCC003011A_c01
agatcgtgcaattgttcttttGGTTTGGCGCTGCGGTCCGGACACGCCGGGGGCTTGCAC
GTTTTACTAGTCGCGTTTCTAGGCAGCGACCGCCCGTGGAGCCGGTGTCGAGGTCACCAT
GAGGAGCGCTGCTGTGCGCGTGCTGGGAGCCCAATGGGCAGGTGTCGGAGCGCAGGAGGC
GGGAAGCCGGGCTGCACGCGCCTTCGCCACTGCCACGTTCGTGCCGGGAGTGAGCGGCGA
CGCCAGCGGCGTGGTGTCCGCCGTGGACGCGCTGATGAGCCATGACAGTGCCGCTACCGG
CAAGGACGTGGCGGACGCTGCCGTGGCGCTGGCGTACCTGGGCACCCGCGGGAACCGCCG
CGTGTGGGGCAAGGTGCTGGAGAAGGCCGCCTCTACGCCACTGGACGGCCCCAGCCTGGC
CAATCTGTCCTGGGCGCTGTCCGCTGCCAACGTGGACCACACCCGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003011A_C01 KCC003011A_c01
         (468 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         47  1e-04
ref|NP_695231.1| angiomotin [Mus musculus] gi|18479137|gb|AAL734...    45  3e-04
dbj|BAC98087.1| mKIAA1071 protein [Mus musculus]                       45  3e-04
pir||G84693 probable proline-rich protein [imported] - Arabidops...    44  0.001
ref|NP_180484.2| proline-rich protein -related [Arabidopsis thal...    44  0.001

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 42/130 (32%), Positives = 52/130 (39%), Gaps = 6/130 (4%)
 Frame = -2

Query: 389 RPSPAPCPTRGGSRGCPGTPAPRQRPPRPCR*RHCHGSSARPRRTPRRWRRRSLPARTWQ 210
           R SP   P R   R  P   +PR+ PPR         + A PR +P+R   R+ P RT  
Sbjct: 123 RASPTRTPPRASPRRTPPRASPRRTPPR------ASPTRAPPRASPKRTPPRASPTRT-- 174

Query: 209 WRRRVQPGFPPPA---LRHLPIGLPARAQQRSSW*PRHRLHGRSLPRNATSKTCKPPACP 39
              R  P   PP     R  P   PAR   R+S         R +P  A+     P A P
Sbjct: 175 -PPRASPTRTPPTESPARTPPTASPARTPSRAS--------PRRMPPRASPTRTPPRASP 225

Query: 38  DRS---AKPK 18
            R+   A PK
Sbjct: 226 TRTPPRASPK 235

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 46/144 (31%), Positives = 55/144 (37%), Gaps = 5/144 (3%)
 Frame = -2

Query: 434 PRTDWPGWGRPVA*RRPSPAPCPTRGGSRGCPGTPAPRQRPPRPCR*RHCHGSSARPRRT 255
           P T+ P    P A    SPA  P R      P   +P + PPR           A PRRT
Sbjct: 22  PPTESPARTPPTA----SPARTPPRASPARTPPRASPGRTPPR-----------ASPRRT 66

Query: 254 PRRWRRRSLPARTWQWRR--RVQPGFPPPA---LRHLPIGLPARAQQRSSW*PRHRLHGR 90
           P R   R  P R    R      P   PP     R  P   PAR   R+S  PR     R
Sbjct: 67  PPRASPRRAPPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRAS--PR-----R 119

Query: 89  SLPRNATSKTCKPPACPDRSAKPK 18
           + PR + ++T  PP    R   P+
Sbjct: 120 TPPRASPTRT--PPRASPRRTPPR 141

 Score = 40.4 bits (93), Expect = 0.010
 Identities = 45/141 (31%), Positives = 53/141 (36%), Gaps = 3/141 (2%)
 Frame = -2

Query: 443 RTAPRTDWPGWGRPVA*RRPSPAPCPTRGGSRGCPGTPAPRQRPPRPCR*RHCHGSS--- 273
           RT PR   P    P    R SP   P R   R  P   +PR+ PPR    R    +S   
Sbjct: 38  RTPPRAS-PARTPP----RASPGRTPPRASPRRTPPRASPRRAPPRASPRRTPPTASPTR 92

Query: 272 ARPRRTPRRWRRRSLPARTWQWRRRVQPGFPPPALRHLPIGLPARAQQRSSW*PRHRLHG 93
             P  +P R    + PART     R  P   PP  R  P   P RA  R +     R   
Sbjct: 93  TPPTESPARTPPTASPART---PSRASPRRTPP--RASPTRTPPRASPRRT---PPRASP 144

Query: 92  RSLPRNATSKTCKPPACPDRS 30
           R  P  A+     P A P R+
Sbjct: 145 RRTPPRASPTRAPPRASPKRT 165

>ref|NP_695231.1| angiomotin [Mus musculus] gi|18479137|gb|AAL73436.1|AF461135_1
           angiomotin [Mus musculus]
          Length = 891

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 29/91 (31%), Positives = 47/91 (50%), Gaps = 4/91 (4%)
 Frame = -1

Query: 342 PRYASATAASATSLPVAALSWLISASTADTTPLASPLTPGTNVA----VAKARAARLPAS 175
           P  A+A A +A + P  ++S   S S A++   A+P+ P   V     V+ A A ++PA+
Sbjct: 681 PSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVSPAAAVQIPAA 740

Query: 174 CAPTPAHWAPSTRTAALLMVTSTPAPRAVAA 82
            + TPA  +P+  TA   +  +T A    AA
Sbjct: 741 ASLTPATVSPTAATATAAVAAATTAAITAAA 771

 Score = 32.3 bits (72), Expect = 2.8
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
 Frame = -1

Query: 408 PSSGVEAAFSST-----LPHTRRFPRVPRYASATAASA-------TSLPVAALSWLISAS 265
           PS+ + +A S T        T R P   + A+ T  SA        + P AA++   + +
Sbjct: 590 PSTPLLSAHSKTGSRDCSTQTERGPESTKTAAVTPISAPMAGPVAAAAPAAAINATAATN 649

Query: 264 TA----DTTPL--ASPLTPGTNVAVAKARAARLPASCAPTPAHWAPSTRTAALLMVT--- 112
           TA    +TT +  A+P+      A A A A   PA+ A   A  AP+T  +A   V+   
Sbjct: 650 TATAATNTTIMVAAAPVAVAAVAAPAAAAATPSPANAAALAAAAAPATSVSAATSVSAAN 709

Query: 111 --STPAPRAVAA 82
             S  AP A AA
Sbjct: 710 SISPAAPVAPAA 721

>dbj|BAC98087.1| mKIAA1071 protein [Mus musculus]
          Length = 539

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 29/91 (31%), Positives = 47/91 (50%), Gaps = 4/91 (4%)
 Frame = -1

Query: 342 PRYASATAASATSLPVAALSWLISASTADTTPLASPLTPGTNVA----VAKARAARLPAS 175
           P  A+A A +A + P  ++S   S S A++   A+P+ P   V     V+ A A ++PA+
Sbjct: 329 PSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAVVPPAAPVSPAAAVQIPAA 388

Query: 174 CAPTPAHWAPSTRTAALLMVTSTPAPRAVAA 82
            + TPA  +P+  TA   +  +T A    AA
Sbjct: 389 ASLTPATVSPTAATATAAVAAATTAAITAAA 419

 Score = 32.3 bits (72), Expect = 2.8
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
 Frame = -1

Query: 408 PSSGVEAAFSST-----LPHTRRFPRVPRYASATAASA-------TSLPVAALSWLISAS 265
           PS+ + +A S T        T R P   + A+ T  SA        + P AA++   + +
Sbjct: 238 PSTPLLSAHSKTGSRDCSTQTERGPESTKTAAVTPISAPMAGPVAAAAPAAAINATAATN 297

Query: 264 TA----DTTPL--ASPLTPGTNVAVAKARAARLPASCAPTPAHWAPSTRTAALLMVT--- 112
           TA    +TT +  A+P+      A A A A   PA+ A   A  AP+T  +A   V+   
Sbjct: 298 TATAATNTTIMVAAAPVAVAAVAAPAAAAATPSPANAAALAAAAAPATSVSAATSVSAAN 357

Query: 111 --STPAPRAVAA 82
             S  AP A AA
Sbjct: 358 SISPAAPVAPAA 369

>pir||G84693 probable proline-rich protein [imported] - Arabidopsis thaliana
           gi|3980411|gb|AAC95214.1| putative proline-rich protein
           [Arabidopsis thaliana]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 47/135 (34%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
 Frame = -2

Query: 404 PVA*RRPSPAPCPTRGGSRGCPGTPAPRQRPPRP-CR*RHCHGSSARPRRTPRRWRRRSL 228
           P A RR SP+P   R   R  P  PA R R P P  R R      AR  R+P   RRR  
Sbjct: 328 PPARRRRSPSPPARR---RRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRS 384

Query: 227 PARTWQWRRRVQPGFPPPALRHLPIGLPARAQQRSSW*PRHRLHGRSLPRNATSKTCKPP 48
           P+     RRR  P  PP   R  P  L  R +  S       L+ R+  R+  +K  +  
Sbjct: 385 PSP--PARRRRSPS-PPARRRRSPSPLYRRNRSPSP------LYRRNRSRSPLAKRGRSD 435

Query: 47  ACPDRSAKPKEQLHD 3
           + P RS  P  +L D
Sbjct: 436 S-PGRSPSPVARLRD 449

>ref|NP_180484.2| proline-rich protein -related [Arabidopsis thaliana]
           gi|21928131|gb|AAM78093.1| At2g29210/F16P2.41
           [Arabidopsis thaliana] gi|23308459|gb|AAN18199.1|
           At2g29210/F16P2.41 [Arabidopsis thaliana]
          Length = 878

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 47/135 (34%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
 Frame = -2

Query: 404 PVA*RRPSPAPCPTRGGSRGCPGTPAPRQRPPRP-CR*RHCHGSSARPRRTPRRWRRRSL 228
           P A RR SP+P   R   R  P  PA R R P P  R R      AR  R+P   RRR  
Sbjct: 315 PPARRRRSPSPPARR---RRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRS 371

Query: 227 PARTWQWRRRVQPGFPPPALRHLPIGLPARAQQRSSW*PRHRLHGRSLPRNATSKTCKPP 48
           P+     RRR  P  PP   R  P  L  R +  S       L+ R+  R+  +K  +  
Sbjct: 372 PSP--PARRRRSPS-PPARRRRSPSPLYRRNRSPSP------LYRRNRSRSPLAKRGRSD 422

Query: 47  ACPDRSAKPKEQLHD 3
           + P RS  P  +L D
Sbjct: 423 S-PGRSPSPVARLRD 436



EST assemble image


clone accession position
1 LCL089h11_r AV631183 1 291
2 LCL030h10_r AV627711 22 285
3 MXL015e08_r BP093913 27 319
4 LC085a12_r AV624961 33 468
5 LCL023c08_r AV627233 71 339




Chlamydomonas reinhardtii
Kazusa DNA Research Institute