KCC003010A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003010A_C01 KCC003010A_c01
cgggcccggacacagggctggtcgcgacggaggggtcattgagttacgaactggtgcagc
cgcagcgcgtggggcagcggACAGCCAACACACCAGTGACTGGAGAAGTGCGCTGCAACG
CGCCCTACACACTTTCCATGCGTGATGTGGACCGTGGCTTGGTCCTGAGTCCTCACAAGG
CATGCTGACGTACACTGCATTCATGGTGGTCGGTGGCTACCTTCCCGACACATCCTTACT
TAGCGTGCTGGCTAGTGTGCACATGCGCGAGCGAGTGAGCGTTTGGTAGTATGTAGCAGT
GCCTGTGTGCGCGTACTTTGCTCGTGAACGAATGGTGATGCACGCGCGCAGCGGGAAGTG
TGTTAGTAACGTCAGATTTTATATCATCCATTCATTTACATCGCATACCGTTGGAAAGCT
GGCCAGCCTCACCAGCCCCGCGCGGGGTTATGGGCACCTGAGGGATCGAAATGCGCCGCA
AGCGCGTGTGGGGCAATTGAGTGTGTTATTAGATAGCATGAGGGAAGGTAACACGCAGGA
CAGTTCCCGAGGGTGTGGACGAGAGCACGCCGACCATGCGGTGAGGCGCGCGCGCACGCT
CACAGATCTTGTGTGCATGCGTGTACGGGAGATGCATGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003010A_C01 KCC003010A_c01
         (640 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB53759.1| SCO-spondin [Bos taurus]                               38  0.14
ref|NP_777131.1| SCO-spondin [Bos taurus] gi|20145484|emb|CAC949...    38  0.14
emb|CAD36365.1| gp120 protein [Human immunodeficiency virus 1]         37  0.24
pir||C72619 hypothetical protein APE1412 - Aeropyrum pernix (str...    36  0.54
ref|NP_811824.1| putative glycosyslhydrolase [Bacteroides thetai...    35  0.71

>emb|CAB53759.1| SCO-spondin [Bos taurus]
          Length = 685

 Score = 37.7 bits (86), Expect = 0.14
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 186 SMPCEDSGPSHGPHHAWKVCRARCSALLQSLVCWLSAAPRAAAAPVRNSMTPPSRPALCP 7
           S PC++  P+  P   W  C A C    +    + +  P  A + +   +   S P LCP
Sbjct: 259 SWPCKEGQPTWSPWTPWSECSASCGPARRHKHRFCTRPPGGAPSSMAPPLLLSSVPPLCP 318

Query: 6   GP 1
           GP
Sbjct: 319 GP 320

>ref|NP_777131.1| SCO-spondin [Bos taurus] gi|20145484|emb|CAC94914.1| SCO-spondin [Bos
            taurus]
          Length = 5146

 Score = 37.7 bits (86), Expect = 0.14
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 186  SMPCEDSGPSHGPHHAWKVCRARCSALLQSLVCWLSAAPRAAAAPVRNSMTPPSRPALCP 7
            S PC++  P+  P   W  C A C    +    + +  P  A + +   +   S P LCP
Sbjct: 3156 SWPCKEGQPTWSPWTPWSECSASCGPARRHKHRFCTRPPGGAPSSMAPPLLLSSVPPLCP 3215

Query: 6    GP 1
            GP
Sbjct: 3216 GP 3217

>emb|CAD36365.1| gp120 protein [Human immunodeficiency virus 1]
          Length = 196

 Score = 37.0 bits (84), Expect = 0.24
 Identities = 17/39 (43%), Positives = 25/39 (63%)
 Frame = +3

Query: 63  QRVGQRTANTPVTGEVRCNAPYTLSMRDVDRGLVLSPHK 179
           QRVGQ     P+ G++RCN+P T  +   D G+V SP++
Sbjct: 154 QRVGQAIYAPPIQGKIRCNSPITGLLLTRDGGVVNSPNE 192

>pir||C72619 hypothetical protein APE1412 - Aeropyrum pernix (strain K1)
           gi|5105095|dbj|BAA80409.1| 156aa long hypothetical
           protein [Aeropyrum pernix]
          Length = 156

 Score = 35.8 bits (81), Expect = 0.54
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
 Frame = -2

Query: 327 SRAKYAHTGTATYYQTLTRSRMCTLASTLSKDVSGR*P----PTTMNAVYVSMPCEDSGP 160
           S A+   TG+A Y        M T +S + K + G  P    P + NA  VS       P
Sbjct: 40  SAARPPITGSALY-------AMATTSSLVKKPLKGGTPARLSPASQNAAAVSFMYLAKPP 92

Query: 159 SHGPHHAWKVC----RARCSALLQSLVCWLSAAPR--AAAAPVRNSMTPPSR 22
               +  W  C     AR SA L++   WL+  PR  A A+P  +  +PP+R
Sbjct: 93  ILSMNLLWAACITHPAARNSAALKT--AWLTRWPRPAATASPASSRASPPAR 142

>ref|NP_811824.1| putative glycosyslhydrolase [Bacteroides thetaiotaomicron VPI-5482]
           gi|29340225|gb|AAO78018.1| putative glycosyslhydrolase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1544

 Score = 35.4 bits (80), Expect = 0.71
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
 Frame = +2

Query: 11  HRAGRDGGVIELRTGAAAARGAADSQHTSDW------------RSALQRALHT---FHA* 145
           HR G  GGV  L  G    +GA  +  +S+W            R  +   +H    + + 
Sbjct: 393 HRIGV-GGVFNLEGGTGIPKGAV-TYLSSEWSELKAHAVKEAARLGIDYVMHNCPGWSSS 450

Query: 146 CGPWLGPESSQGMLTYTAFMVVGGYLPDTSL 238
            GPW+ PE S   LT++   VVGG   DT L
Sbjct: 451 GGPWITPEYSMQKLTWSEIEVVGGEQIDTLL 481



EST assemble image


clone accession position
1 LC083h01_r AV624869 1 520
2 LCL007h10_r AV626367 174 640




Chlamydomonas reinhardtii
Kazusa DNA Research Institute