KCC003004A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003004A_C01 KCC003004A_c01
ctgggcgcgacacttcaaataatgcatagcatattaagtAGCGCTTCATCCTAGTTGCAA
GAGGTCCTCGAGCTCTGCCGAAACCACGCACGCATGCGCTGAACTGAACACGGCTTGTAC
ACAACGTCGCTGCCATGGCTCTCGCTTCTCGCAATGTACTCGCACGTCGTGCTGGGTTGA
GCGCTGCTCGTCGCCCAGCGCGCTCCACGGTCGCGTGCTTGGCATCTGGGCGCGTTAAAC
AAATTCCTATTTTCCCCCTGAATGTCGTGGCGCTACCAGCGGCAACGGTGCCCCTCATGA
TCTTTGAGGCCAGGTACCGAGTGCTCTTCAACACGATTCTTGCGGGCGAGGCTGGCGTGG
AGGAGGGTCTGGTTCAGGCTGACTCGCCCTTCTGCGGCAGCCGCAAGTTCGGCATGTGCT
ATGTGGACGGGCGGGCGGACCCCAGCGGCGCCTCGCGCATGGCCTCCATCGGCACAGTGC
TGGAGGTGGTGGATTTCGCACACGTGCAGGACGGGCGCATCTTCCTGACCACCAAAGGCC
GCGAGCGCTTCCGTGTGCGCTCCATTGTGCGCGAGCGGCCATCATGATCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003004A_C01 KCC003004A_c01
         (592 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173404.1| expressed protein [Arabidopsis thaliana] gi|255...    75  7e-13
ref|NP_177679.1| protease -related [Arabidopsis thaliana] gi|254...    74  1e-12
gb|AAL77655.1| At1g75460/F1B16_22 [Arabidopsis thaliana]               74  1e-12
dbj|BAC83950.1| putative ATP-dependent proteinase; BsgA [Oryza s...    69  4e-11
ref|NP_488375.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    68  1e-10

>ref|NP_173404.1| expressed protein [Arabidopsis thaliana] gi|25518081|pir||E86330
           F6F9.20 protein - Arabidopsis thaliana
           gi|10086494|gb|AAG12554.1|AC007797_14 Unknown Protein
           [Arabidopsis thaliana] gi|22136024|gb|AAM91594.1|
           unknown protein [Arabidopsis thaliana]
           gi|23197842|gb|AAN15448.1| unknown protein [Arabidopsis
           thaliana]
          Length = 278

 Score = 75.1 bits (183), Expect = 7e-13
 Identities = 45/114 (39%), Positives = 62/114 (53%)
 Frame = +3

Query: 240 QIPIFPLNVVALPAATVPLMIFEARYRVLFNTILAGEAGVEEGLVQADSPFCGSRKFGMC 419
           ++P+FPL +V  P AT+PL IFE RYRV+  T+L  +                  +FG+ 
Sbjct: 71  ELPLFPLPLVLFPGATIPLQIFEFRYRVMMQTLLQSDL-----------------RFGVV 113

Query: 420 YVDGRADPSGASRMASIGTVLEVVDFAHVQDGRIFLTTKGRERFRVRSIVRERP 581
           Y D     SG++  A IG V E+V    + D R FL  KG+ERFRV  +VR +P
Sbjct: 114 YSDA---VSGSA--AGIGCVGEIVKHERLVDDRFFLICKGQERFRVTDLVRTKP 162

>ref|NP_177679.1| protease -related [Arabidopsis thaliana] gi|25406437|pir||C96785
           hypothetical protein F1B16.1 [imported] - Arabidopsis
           thaliana gi|10120444|gb|AAG13069.1|AC023754_7 Unknown
           protein [Arabidopsis thaliana]
           gi|15028233|gb|AAK76613.1| putative protease
           [Arabidopsis thaliana] gi|21618023|gb|AAM67073.1|
           protease, putative [Arabidopsis thaliana]
           gi|23296404|gb|AAN13110.1| putative protease
           [Arabidopsis thaliana]
          Length = 278

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 43/119 (36%), Positives = 63/119 (52%)
 Frame = +3

Query: 225 SGRVKQIPIFPLNVVALPAATVPLMIFEARYRVLFNTILAGEAGVEEGLVQADSPFCGSR 404
           S  + ++P+FPL +V  P A +PL IFE RYR++ +T+L  +                  
Sbjct: 66  SDDIVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQSDL----------------- 108

Query: 405 KFGMCYVDGRADPSGASRMASIGTVLEVVDFAHVQDGRIFLTTKGRERFRVRSIVRERP 581
           +FG+ Y D     S +   A +G V EVV    + D R FL  KG+ERFRV ++VR +P
Sbjct: 109 RFGVVYSD-----SVSGSAAEVGCVGEVVKHERLVDDRFFLVCKGQERFRVTNVVRTKP 162

>gb|AAL77655.1| At1g75460/F1B16_22 [Arabidopsis thaliana]
          Length = 278

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 43/119 (36%), Positives = 63/119 (52%)
 Frame = +3

Query: 225 SGRVKQIPIFPLNVVALPAATVPLMIFEARYRVLFNTILAGEAGVEEGLVQADSPFCGSR 404
           S  + ++P+FPL +V  P A +PL IFE RYR++ +T+L  +                  
Sbjct: 66  SDDIVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLLSDL----------------- 108

Query: 405 KFGMCYVDGRADPSGASRMASIGTVLEVVDFAHVQDGRIFLTTKGRERFRVRSIVRERP 581
           +FG+ Y D     S +   A +G V EVV    + D R FL  KG+ERFRV ++VR +P
Sbjct: 109 RFGVVYSD-----SVSGSAAEVGCVGEVVKHERLVDDRFFLVCKGQERFRVTNVVRTKP 162

>dbj|BAC83950.1| putative ATP-dependent proteinase; BsgA [Oryza sativa (japonica
           cultivar-group)]
          Length = 291

 Score = 69.3 bits (168), Expect = 4e-11
 Identities = 42/114 (36%), Positives = 59/114 (50%)
 Frame = +3

Query: 240 QIPIFPLNVVALPAATVPLMIFEARYRVLFNTILAGEAGVEEGLVQADSPFCGSRKFGMC 419
           ++P+FPL +V  P AT  L IFE RYR++ +T+L  +                  +FG+ 
Sbjct: 76  ELPLFPLPLVLFPDATHALHIFEFRYRIMMHTVLQTDL-----------------RFGVV 118

Query: 420 YVDGRADPSGASRMASIGTVLEVVDFAHVQDGRIFLTTKGRERFRVRSIVRERP 581
           +       SGA   A +G V EVV    + D R FL  KG+ERFRV  +VR +P
Sbjct: 119 FAG-----SGAGGAADVGCVGEVVKHERLADDRFFLICKGQERFRVARVVRTKP 167

>ref|NP_488375.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25534724|pir||AH2347
           hypothetical protein all4335 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17133471|dbj|BAB76034.1|
           ORF_ID:all4335~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 216

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = +3

Query: 234 VKQIPIFPL-NVVALPAATVPLMIFEARYRVLFNTILAGEAGVEEGLVQADSPFCGSRKF 410
           V+++P+FPL  VV  P   +PL IFE RYR++ NTIL  +                 R+F
Sbjct: 9   VRELPLFPLPEVVLFPTRPLPLHIFEFRYRIMMNTILESD-----------------RRF 51

Query: 411 GMCYVDGRADPSGASRMASIGTVLEVVDFAHVQDGRIFLTTKGRERFRVRSIVRERP 581
           G+  VD          +A++G   E++ +  + D R+ + T G++RFRV   VRE+P
Sbjct: 52  GVLMVD-----PVKGTIANVGCCAEIIHYQRLPDDRMKMLTLGQQRFRVLEYVREKP 103



EST assemble image


clone accession position
1 LC090f11_r AV625306 1 495
2 LC081f02_r AV624715 40 592




Chlamydomonas reinhardtii
Kazusa DNA Research Institute