KCC003003A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003003A_C01 KCC003003A_c01
agaagccgcacacgcacagagCTCGCAACCGAATCTCGCTCGACTGACTCCGCTCAAGCC
CTGGCCCCTTCTAGCAGTTTCATTCAGTATCAACAAAGCTTGCTGTTTACCGAATCCCTG
TGGCACACCTGATGCACGCGACATGGCTGGCGGGAGTCTTGCAGCTCCAACCGAGGACTG
TATAGATGGCTGCAATAGAGACTAGCATAAATTTCGTATAGTTCAGGAGAGGATAAAGCG
GCCCAGGGCGGACTTCTGGAAGTTTGGGCACCATGAGCGCGAGCGACAAGCGCGAGCGGC
AGGAGGTTTATACATATGTGGCACCGGACCCGGTGTACGCCATGAACTGGAGCGTACGGC
GGGACAAGCGCTTCCGACTGGGCGTTGCTTCATTCCGGGAGGACGTCACCAACTATGTTG
ACATTGTGTCACTGGACGACGAGTCGGACGAGCTGCGGTCGGACCCCGGGCTGCGCTTCC
CGCACGACTACCCGGCCACCAAGCTCATGTGGATGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003003A_C01 KCC003003A_c01
         (517 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM95646.1| WD-repeat protein GhTTG4 [Gossypium hirsutum]           95  6e-19
gb|AAM95643.1| WD-repeat protein GhTTG2 [Gossypium hirsutum] gi|...    94  1e-18
gb|AAC18912.1| ATAN11 [Arabidopsis thaliana]                           92  4e-18
ref|NP_172751.1| flower pigmentation protein ATAN11 [Arabidopsis...    92  4e-18
gb|AAM65213.1| flower pigmentation protein ATAN11 [Arabidopsis t...    92  4e-18

>gb|AAM95646.1| WD-repeat protein GhTTG4 [Gossypium hirsutum]
          Length = 346

 Score = 94.7 bits (234), Expect = 6e-19
 Identities = 42/79 (53%), Positives = 58/79 (73%)
 Frame = +3

Query: 279 ASDKRERQEVYTYVAPDPVYAMNWSVRRDKRFRLGVASFREDVTNYVDIVSLDDESDELR 458
           + ++++R E+YTY AP  +YAMNWSVRRDK++RL +AS  E   N + IV LDD + E+R
Sbjct: 12  SDEQQKRSEIYTYEAPWYIYAMNWSVRRDKKYRLAIASLLEQYPNRLQIVQLDDSNGEIR 71

Query: 459 SDPGLRFPHDYPATKLMWM 515
           SDP L F H YPATK +++
Sbjct: 72  SDPNLSFDHPYPATKTIFI 90

>gb|AAM95643.1| WD-repeat protein GhTTG2 [Gossypium hirsutum]
           gi|22324805|gb|AAM95644.1| WD-repeat protein GhTTG2
           [Gossypium hirsutum]
          Length = 346

 Score = 94.0 bits (232), Expect = 1e-18
 Identities = 41/79 (51%), Positives = 58/79 (72%)
 Frame = +3

Query: 279 ASDKRERQEVYTYVAPDPVYAMNWSVRRDKRFRLGVASFREDVTNYVDIVSLDDESDELR 458
           + ++++R E+YTY AP  +YAMNWSVRRDK++RL +AS  E   N ++IV LDD + E+R
Sbjct: 12  SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEHYNNRLEIVQLDDSNGEIR 71

Query: 459 SDPGLRFPHDYPATKLMWM 515
           SDP L F H YP TK +++
Sbjct: 72  SDPNLSFDHPYPPTKTIFI 90

>gb|AAC18912.1| ATAN11 [Arabidopsis thaliana]
          Length = 346

 Score = 92.0 bits (227), Expect = 4e-18
 Identities = 40/79 (50%), Positives = 57/79 (71%)
 Frame = +3

Query: 279 ASDKRERQEVYTYVAPDPVYAMNWSVRRDKRFRLGVASFREDVTNYVDIVSLDDESDELR 458
           + ++++R E+YTY AP  +YAMNWSVRRDK++RL + S  E   N V+IV LD+ + E+R
Sbjct: 12  SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIR 71

Query: 459 SDPGLRFPHDYPATKLMWM 515
           SDP L F H YP TK +++
Sbjct: 72  SDPNLSFEHPYPPTKTIFI 90

>ref|NP_172751.1| flower pigmentation protein ATAN11 [Arabidopsis thaliana]
           gi|25518671|pir||G86262 hypothetical protein F13K23.16 -
           Arabidopsis thaliana
           gi|8698737|gb|AAF78495.1|AC012187_15 Identical to WD
           repeat protein ATAN11 from Arabidopsis thaliana
           gb|U94746 and contains multiple WD domain PF|00400
           repeats.  ESTs gb|H35958, gb|AA712360, gb|R90717,
           gb|AW004301 come from this gene
           gi|20260404|gb|AAM13100.1| WD repeat protein ATAN11
           [Arabidopsis thaliana] gi|22136196|gb|AAM91176.1| WD
           repeat protein ATAN11 [Arabidopsis thaliana]
          Length = 346

 Score = 92.0 bits (227), Expect = 4e-18
 Identities = 40/79 (50%), Positives = 57/79 (71%)
 Frame = +3

Query: 279 ASDKRERQEVYTYVAPDPVYAMNWSVRRDKRFRLGVASFREDVTNYVDIVSLDDESDELR 458
           + ++++R E+YTY AP  +YAMNWSVRRDK++RL + S  E   N V+IV LD+ + E+R
Sbjct: 12  SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIR 71

Query: 459 SDPGLRFPHDYPATKLMWM 515
           SDP L F H YP TK +++
Sbjct: 72  SDPNLSFEHPYPPTKTIFI 90

>gb|AAM65213.1| flower pigmentation protein ATAN11 [Arabidopsis thaliana]
          Length = 346

 Score = 92.0 bits (227), Expect = 4e-18
 Identities = 40/79 (50%), Positives = 57/79 (71%)
 Frame = +3

Query: 279 ASDKRERQEVYTYVAPDPVYAMNWSVRRDKRFRLGVASFREDVTNYVDIVSLDDESDELR 458
           + ++++R E+YTY AP  +YAMNWSVRRDK++RL + S  E   N V+IV LD+ + E+R
Sbjct: 12  SDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIR 71

Query: 459 SDPGLRFPHDYPATKLMWM 515
           SDP L F H YP TK +++
Sbjct: 72  SDPNLSFEHPYPPTKTIFI 90



EST assemble image


clone accession position
1 LC080d07_r AV624627 1 517
2 LCL049h01_r AV628975 22 325




Chlamydomonas reinhardtii
Kazusa DNA Research Institute